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1. Genomic sequence derived simple sequence repeats markers: A case study with Medicago   spp
by Mahalakshmi, Viswanathan and Aparna, P and Ramadevi, S and Ortiz, Rodomiro
Genomic sequence derived simple sequence repeats markers: A case study with Medicago   spp, 12/2002
Simple sequence repeats (SSR) or micro-satellites are becoming standard DNA markers for plant genome analysis and are being used as markers in marker assisted... 
bioinformatics, genetic markers, repeat motifs, simple sequence repeats, SSR
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2. Full Text Survey of simple sequence repeats in completed fungal genomes
by Karaoglu, H and Lee, CMY and Meyer, W
MOLECULAR BIOLOGY AND EVOLUTION, ISSN 0737-4038, 03/2005, Volume 22, Issue 3, pp. 639 - 649
The use of simple sequence repeats or microsatellites as genetic markers has become very popular because of their abundance and length variation between... 
DROSOPHILA-MELANOGASTER | BIOCHEMISTRY & MOLECULAR BIOLOGY | FILAMENTOUS FUNGI | DINUCLEOTIDE MICROSATELLITES | MAMMALIAN GENOMES | YEAST SACCHAROMYCES-CEREVISIAE | POINT MUTATIONS | GENETIC-VARIATION | EVOLUTIONARY BIOLOGY | fungi | SHORT TANDEM REPEATS | GENETICS & HEREDITY | microsatellite | FRAGILE-X-SYNDROME | AMPLIFIED POLYMORPHIC DNA | simple sequence repeat
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3. Full Text Evolution analysis of simple sequence repeats in plant genome
by Qin, Zhen and Wang, Yanping and Wang, Qingmei and Li, Aixian and Hou, Fuyun and Zhang, Liming
PLoS ONE, ISSN 1932-6203, 12/2015, Volume 10, Issue 12, p. e0144108
Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in plants. In order to reveal the evolution of plant... 
EUKARYOTIC GENOMES | MUTATION-RATES | ARABIDOPSIS-THALIANA | RICE GENOME | TANDEM REPEATS | DUPLICATE GENES | MULTIDISCIPLINARY SCIENCES | WIDE ANALYSIS | MICROSATELLITES | MAIZE | DIVERGENCE | Plants - genetics | Species Specificity | Base Composition | Genome Size | Genome, Plant | Phylogeny | Plants - classification | Sequence Analysis, DNA - methods | Microsatellite Repeats | Evolution, Molecular | Evolution | Genomes | Research | Plants | Plant genetics | Nucleotide sequence | Genomics | Genes | Terrestrial environments | Biological evolution | Science | Corn | Nucleotides | Gene sequencing | Simple sequence repeats | Crop diseases | Mutation | Species | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid | DNA
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4. Full Text Evolutionary pressures on simple sequence repeats in prokaryotic coding regions
by Lin, Wei-Hsiang and Kussell, Edo
Nucleic Acids Research, ISSN 0305-1048, 03/2012, Volume 40, Issue 6, pp. 2399 - 2413
Simple sequence repeats (SSRs) are indel mutational hotspots in genomes. In prokaryotes, SSR loci can cause phase variation, a microbial survival strategy that... 
FLUCTUATING ENVIRONMENTS | AMINO-ACID INSERTIONS | MICROSATELLITE | DNA REPEATS | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENE-EXPRESSION | PHASE VARIATION | FRAMESHIFT MUTATION | DIVERSITY | SACCHAROMYCES-CEREVISIAE | T4 LYSOZYME | Sequence Analysis, Protein | Codon | Archaea - genetics | Bacteria - genetics | INDEL Mutation | Microsatellite Repeats | Evolution, Molecular | Algorithms | Phase variations | Prokaryotes | Amino acid sequence | Evolution | Genomes | Mutation rates | Stochasticity | Protein structure | Survival | Simple sequence repeats | Computational Biology
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5. Full Text Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer
by Li, Chunfang and Zhu, Yingjie and Guo, Xu and Sun, Chao and Luo, Hongmei and Song, Jingyuan and Li, Ying and Wang, Lizhi and Qian, Jun and Chen, Shilin
BMC Genomics, ISSN 1471-2164, 04/2013, Volume 14, Issue 1, pp. 245 - 245
Background: Panax ginseng C. A. Meyer is one of the most widely used medicinal plants. Complete genome information for this species remains unavailable due to... 
microRNA | Expressed sequence tag | Panax ginseng C. A. Meyer | Ginsenoside | Simple sequence repeats | PLANT | HORDEUM-VULGARE L | EST-DERIVED MICROSATELLITES | DISCOVERY | TARGET GENES | REACTIVE OXYGEN | TECHNOLOGIES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | COMPUTATIONAL IDENTIFICATION | GENETICS & HEREDITY | ARABIDOPSIS | TAGS | Ginsenosides - biosynthesis | Breeding | Genes, Plant - genetics | Molecular Sequence Annotation | Panax - metabolism | Plant Structures - genetics | Expressed Sequence Tags - metabolism | Gene Expression Profiling | MicroRNAs - genetics | Organ Specificity | Microsatellite Repeats - genetics | Panax - genetics | Physiological aspects | Genetic aspects | MicroRNA | Research | Ginseng | DNA | Design | Signal transduction | Research & development--R&D | Genomics | Software | Genetic engineering | Genomes | Data bases
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6. Full Text Distribution patterns and variation analysis of simple sequence repeats in different genomic regions of bovid genomes
by Qi, Wen-Hua and Jiang, Xue-Mei and Yan, Chao-Chao and Zhang, Wan-Qing and Xiao, Guo-Sheng and Yue, Bi-Song and Zhou, Cai-Quan
Scientific Reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 14407 - 13
As the first examination of distribution, guanine-cytosine (GC) pattern, and variation analysis of microsatellites (SSRs) in different genomic regions of six... 
ORYZA-SATIVA L | EUKARYOTIC GENOMES | ARABIDOPSIS-THALIANA | DNA-SEQUENCES | EVOLUTION | DROSOPHILA-MELANOGASTER | LENGTH VARIATION | PRIMER DESIGN | MULTIDISCIPLINARY SCIENCES | GC CONTENT | MICROSATELLITE MOTIFS | Microsatellites | Introns | Gene loci | Cytosine | Genomes | Variation | Monkeys & apes | Guanine | Simple sequence repeats
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7. Full Text Validation of a set of informative simple sequence repeats markers for variety identification in Pak‐choi (Brassica rapa L. ssp. chinensis var. communis)
by Su, Tongbing and Zhao, Xiuyun and Sui, Guanglei and Yu, Shuancang and Zhang, Fenglan and Wang, Weihong and Zhang, Deshuang and Yu, Yangjun and Chevre, A.‐M
Plant Breeding, ISSN 0179-9541, 06/2017, Volume 136, Issue 3, pp. 410 - 419
A core set of 21 simple sequence repeats ( SSR ) markers was developed for Pak‐choi ( Brassica   rapa ssp.  chinensis var.  communis ) variety identification.... 
var. | communis | Brassica | Pak‐choi | rapa | DNA | ssp. | variety identification | simple sequence repeat | chinensis | fingerprinting | Pak-choi (Brassica rapa ssp. chinensis var. communis) | DNA fingerprinting | AGRONOMY | POTATO | GENETIC-LINKAGE MAP | TRANSFERABILITY | SNP MARKERS | PLANT SCIENCES | CULTIVAR IDENTIFICATION | CHINESE-CABBAGE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Pak-choi (Brassicarapa ssp chinensis var. communis) | MICROSATELLITES | DIVERSITY | RFLP | Classifications | Markers | Tools | Calibration | Gene polymorphism | Simple sequence repeats | Heterozygosity | Fixation | Reproducibility | Morphology | Classification | Inbreeding | Gene loci | Polymorphism
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8. Full Text Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
by Kumpatla, Siva P and Mukhopadhyay, Snehasis
Genome, ISSN 0831-2796, 12/2005, Volume 48, Issue 6, pp. 985 - 998
Simple sequence repeat (SSR) markers are widely used in many plant and animal genomes due to their abundance, hypervariability, and suitability for... 
Mining | Survey | Dicotyledonous species | Markers | SSRs | Bioinformatics | ESTs | Expressed sequence tags | Simple sequence repeats | EUKARYOTIC GENOMES | dicotyledonous species | mining | POLYMORPHISM | EST DATABASES | ORYZA-SATIVA L | GENETICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DNA | bioinformatics | BARLEY | GENETICS & HEREDITY | MICROSATELLITE MARKERS | survey | SSR-MARKERS | PLANTS | simple sequence repeats | expressed sequence tags | markers | Computational Biology - methods | Species Specificity | Magnoliopsida - genetics | Cotyledon - genetics | Databases, Nucleic Acid | Expressed Sequence Tags | Minisatellite Repeats | Genetic markers | Flowers & plants | Genomics
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9. TECHNICAL NOTE - Isolation of simple sequence repeats from groundnut
by Wang, Chuan Tang and Yang, Xin Dao and Chen, Dian Xu and Yu, Shan Lin and Liu, Guang Zhen and Tang, Yue Yi and Xu, Jian Zhi
09/2007
SSRs have proved to be the most powerful tool for variety identification in groundnut of similar origin, and have much potential in genetic and breeding... 
groundnut | isolation | simple sequence repeat
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10. Full Text Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
by Kantety, Ramesh V and La Rota, Mauricio and Matthews, David E and Sorrells, Mark E
Plant Molecular Biology, ISSN 0167-4412, 3/2002, Volume 48, Issue 5, pp. 501 - 510
Plant genomics projects involving model species and many agriculturally important crops are resulting in a rapidly increasing database of genomic and expressed... 
Life Sciences | Biochemistry, general | Plant Pathology | SSR | EST | EST clustering | Plant Sciences | comparative genomics | comparative mapping | Comparative genomics | Comparative mapping | LINKAGE MAP | CAG/CTG REPEATS | HEXAPLOID BREAD WHEAT | BIOCHEMISTRY & MOLECULAR BIOLOGY | DNA MARKERS | TRINUCLEOTIDE | ALLELE VARIATION | ESTS | PLANT SCIENCES | GENETIC DIVERSITY | DINUCLEOTIDE | MICROSATELLITES | Triticum - genetics | Zea mays - genetics | Oryza - genetics | Computational Biology | Poaceae - genetics | Genetic Markers | Hordeum - genetics | Sequence Homology, Nucleic Acid | Databases, Factual | Expressed Sequence Tags | Microsatellite Repeats - genetics | Genetics | Genomics | Cereals | Nucleotide sequence | Crops | Data processing | Evolutionary genetics | Grasses | Simple sequence repeats | Conserved sequence | Databases | Evolution | genomics | Gene mapping | expressed sequence tags | Structure-function relationships
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11. Full Text In-silico-mining of small sequence repeats in hydrogenase maturation subunits of E. coli, clostridium, and Rhodobacter
by Rai, Priya and Pandey, Anjana and Pandey, Ashutosh
International Journal of Hydrogen Energy, ISSN 0360-3199, 07/2019, Volume 44, Issue 33, pp. 17813 - 17822
Presently, the world is facing energy crisis so there is a strong need of mining and analysis of potential bacteria leading to renewable energy generation i.e.... 
Simple sequence repeat identification tool (SSRIT) | Hydrogenase gene | ELECTROCHEMISTRY | FOOD WASTE | NUMBER TANDEM REPEAT | ENERGY & FUELS | CHEMISTRY, PHYSICAL | DARK FERMENTATION | MICROSATELLITE MOTIFS | GENETIC DIVERSITY | GENOMES | VARIABLE-NUMBER | DNA | BIOHYDROGEN PRODUCTION | RICE | Proteins | Genetic markers | Hydrogen | Animal behavior | Analysis | Escherichia coli | Mineral industry | Bacteria | Chromosomes | Mining industry
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12. Full Text Simple sequence repeats showing ‘length preference’ have regulatory functions in humans
by Krishnan, Jaya and Athar, Fathima and Rani, Tirupaati Swaroopa and Mishra, Rakesh Kumar
Gene, ISSN 0378-1119, 09/2017, Volume 628, pp. 156 - 161
Simple sequence repeats (SSRs), simple tandem repeats (STRs) or microsatellites are short tandem repeats of 1–6 nucleotide motifs. They are twice as abundant... 
Cis-regulatory activity | Microsatellites | Boundary elements | Barrier elements | Gene regulation | Simple tandem repeats | Simple sequence repeats | DNA-BINDING | PROTEIN | EPIGENETIC CHANGES | DROSOPHILA | IN-VITRO | SHORT TANDEM REPEATS | CORE PROMOTER | GENETICS & HEREDITY | GENE-EXPRESSION | FRIEDREICH ATAXIA | Cell Line | Promoter Regions, Genetic | Computational Biology - methods | Gene Expression | Enhancer Elements, Genetic | Nucleotide Motifs | Humans | Gene Expression Regulation | Genome, Human | Genes, Reporter | Microsatellite Repeats | Evolution, Molecular | Genetic research | Analysis | Genomics | Quantitative genetics | Anopheles | Epidermal growth factor | Genes | Genomes | Single nucleotide polymorphisms | Calcium-binding proteins | Cells
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13. Full Text Comprehensive analysis of simple sequence repeats in Pre-miRNAs
by Chen, Ming and Tan, Zhongyang and Zeng, Guangming and Peng, Jun
Molecular Biology and Evolution, ISSN 0737-4038, 10/2010, Volume 27, Issue 10, pp. 2227 - 2232
Simple sequence repeats (SSRs) are tandem repeat units of 1-6 bp that are identified in various complete sequences. However, the distribution, nature, and... 
microsatellite | miRNA | pre-miRNA | simple sequence repeat | DROSOPHILA-MELANOGASTER | BIOCHEMISTRY & MOLECULAR BIOLOGY | LENGTH | POLYMORPHISM | ABUNDANCE | EVOLUTIONARY BIOLOGY | CAENORHABDITIS-ELEGANS | EVOLUTION | TANDEM REPEATS | GENOMES | GENES | GENETICS & HEREDITY | MICROSATELLITES | Minisatellite Repeats - genetics | MicroRNAs - genetics | Search Engine - methods | Computational Biology | Studies | Nematodes | Viruses | Molecular biology | Taxonomy | Genomics | Data processing | Genomes | Place preferences | Simple sequence repeats
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