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1. Trees of life
: a visual history of evolution
by Pietsch, Theodore W and University of Washington
2012, ISBN 1421404796, xi, 358
Charts, diagrams, etc | Evolution (Biology) | Tree of life | History | Biologists | Naturalists
Book
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2. Endophytes of forest trees
: biology and applications
by Pirttilä, Anna Maria and Frank, A. Carolin
2011, Forestry sciences, ISBN 9789400715981, Volume 80., x, 319 pages
"Found in every plant species, the diversity of endophytic micro-organisms can be extremely high within different plant organs and tissue types. In trees,... 
Trees | Arbres | Relations plante-champignon | Microbiology | Microbiologie | Plant-microbe relationships | Endophytes | Plant-fungus relationships | Relations plante-micro-organisme | Biology, life sciences | Life Sciences | Microbial Ecology | Plant Biochemistry | Tree Biology | Biodiversity | Forestry | Symbiosis
Book
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3. Full Text Functional traits and the growth-mortality trade-off in tropical trees
by Wright, Ian J and Wright, S. Joseph and Kitajima, Kaoru and Kraft, Nathan J. B and Reich, Peter B and Bunker, Daniel E and Condit, Richard and Dalling, James W and Davies, Stuart J and Díaz, Sandra and Engelbrecht, Bettina M. J and Harms, Kyle E and Hubbell, Stephen P and Marks, Christian O and Ruiz-Jaen, Maria C and Salvador, Cristina M and Zanne, Amy E
Ecology, ISSN 0012-9658, 12/2010, Volume 91, Issue 12, pp. 3664 - 3674
A trade-off between growth and mortality rates characterizes tree species in closed canopy forests. This trade-off is maintained by inherent differences among... 
growth rates | leaf mass per area | maximum height | Barro Colorado Island | Panama | seed mass | seed size | wood density | maximum size | mortality rates | Trees | Average linear density | Mortality | Forest ecology | Plant ecology | Growth traits | Saplings | Plants | Species | Forest trees | Seed mass | Maximum size | Growth rates | Seed size | Leaf mass per area | Wood density | Mortality rates | Maximum height | RECRUITMENT | ALLOMETRY | SHADE TOLERANCE | FOREST | PLANT TRAITS | DIMENSIONS | CONSERVATION | GOOD PREDICTORS | ECOLOGY | LEAF | INTERSPECIFIC VARIATION | Trees - physiology | Seeds - physiology | Tropical Climate | Ecosystem | Biomass | Trees - growth & development | Plant Leaves - physiology | Physiological aspects | Research | Growth | Forests | Growth rate | Wood | Interspecific | Tropical forests | Shade | Trade | Demographics | Canopies | Predictions | Foliage | Variation
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4. Estimating species trees
: practical and theoretical aspects
by Knowles, L. Lacey and Kubatko, Laura Salter
2010, ISBN 0470526858, xii, 215
"Recent computational and modeling advances have produced methods for estimating species trees directly, avoiding the problems and limitations of the... 
Trees | Variation | Mathematical models
Book
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5. Full Text Estimating Species Trees from Unrooted Gene Trees
by Liang Liu and Lili Yu
Systematic Biology, ISSN 1063-5157, 10/2011, Volume 60, Issue 5, pp. 661 - 667
In this study, we develop a distance method for inferring unrooted species trees from a collection of unrooted gene trees. The species tree is estimated by the... 
Biological taxonomies | Internodes | Phylogenetics | Genetic loci | Topology | Phylogeny | Species | Consistent estimators | We they distinction | Estimation methods | species tree | Coalescent theory | gene tree | neighbor joining | MAXIMUM-LIKELIHOOD | DNA-SEQUENCES | PHYLOGENIES | DIVERGENCE TIMES | INFERENCE | MRBAYES | DISTRIBUTIONS | EVOLUTIONARY BIOLOGY | BOOTSTRAP | BAYESIAN-ESTIMATION | Biological Evolution | Computational Biology - methods | Computer Simulation | Bayes Theorem | Models, Genetic | Saccharomyces - classification | Saccharomyces - genetics
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6. Full Text Tree diversity modifies distance-dependent effects on seedling emergence but not plant-soil feedbacks of temperate trees
by Wurst, Susanne and Kaiser, Nina and Nitzsche, Susann and Haase, Josephine and Auge, Harald and Rillig, Matthias C and Powell, Jeff R
Ecology, ISSN 0012-9658, 06/2015, Volume 96, Issue 6, pp. 1529 - 1539
Negative plant-soil feedbacks can impair seedling survival near conspecific trees and may enhance forest diversity. However, the reciprocal aspect of this... 
ectomycorrhiza | temperate forest | diversity | Fagus | pathogens | Quercus | recruitment | mildew | plant-soil feedback | seedling | Trees | Species diversity | Pathogens | Negative feedback | Seedling emergence | Grassland soils | Forest soils | Seedlings | Inoculum | Soil ecology | plant–soil feedback | Seedling | Diversity | Plant-soil feedback | Ectomycorrhiza | Mildew | Temperate forest | Recruitment | SURVIVORSHIP | MORTALITY | LIGHT GRADIENT | COMMUNITIES | FORESTS | DISEASES | GROWTH | PRODUCTIVITY | ECOLOGY | Oak | Plant-soil relationships | Research | Plant spacing | Beech | Forest dynamics
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7. Animal evolution
: genomes, fossils, and trees
by Natural Sciences and Mathematics ;zoological Sciences
2009, ISBN 9780199570300, xvi, 245 p., [8] p. of plates
Animal life, now and over the past half billion years, is incredibly diverse. Describing and understanding the evolution of this diversity of body plans — from... 
evolutionary biology | Evolution (Biology) | Evolution | Systematics | Evo-devo | Genomes | Metazoa
Book
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8. Full Text Trees and shrubs as invasive alien species — 2013 update of the global database
by Marcel Rejmánek and David M. Richardson
Diversity and Distributions, ISSN 1366-9516, 7/2013, Volume 19, Issue 7/8, pp. 1093 - 1094
The global database of invasive trees and shrubs (Richardson & Rejmánek, 2011; Diversity Distrib. 17, 788-809) has been updated, resulting in a total of 751... 
Trees | Coastal ecology | Invasive species | Geographic regions | Databases | Ecological invasion | Shrubs | Biological invasions | Species | Applied ecology | BIODIVERSITY LETTER | shrub invasion | tree invasion | regions of origin | global database | Shrub invasion | Tree invasion | Global database | Regions of origin | ECOLOGY | BIODIVERSITY CONSERVATION
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9. Full Text Gene Trees in Species Trees
by Wayne P. Maddison
Systematic Biology, ISSN 1063-5157, 9/1997, Volume 46, Issue 3, pp. 523 - 536
Exploration of the relationship between gene trees and their containing species trees leads to consideration of how to reconstruct species trees from gene... 
Biological taxonomies | Extinct species | Genes | Phylogenetics | Evolutionary genetics | Genetic loci | Gene duplication | Phylogeny | Species | Speciation | Lineage sorting | Biogeography | Hybridization | Coevolution | Gene trees | Species trees | Tree reconciliation | Horizontal transfer | Gene genealogy | Parsimony | Species concepts | Evolution | Coalescence | CLADOGRAMS | NATURAL-POPULATIONS | SEQUENCES | K CX BIOLOGY, MISCELLANEOUS | GENEALOGY | hybridization | species trees | gene genealogy | BIOLOGY, MISCELLANEOUS | tree reconciliation | coevolution | gene duplication | gene trees | RECOMBINATION | coalescence | biogeography | horizontal transfer | parsimony | evolution | SEGREGATION | ORGANISMS | lineage sorting | SYSTEMATICS | phylogeny | species concepts
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10. Full Text Inferring species trees directly from biallelic genetic markers: Bypassing gene trees in a full coalescent analysis
by Bryant, David and Bouckaert, Remco and Felsenstein, Joseph and Rosenberg, Noah A and Roychoudhury, Arindam
Molecular Biology and Evolution, ISSN 0737-4038, 08/2012, Volume 29, Issue 8, pp. 1917 - 1932
The multispecies coalescent provides an elegant theoretical framework for estimating species trees and species demographics from genetic markers. However,... 
SNAPP | effective population size | multispecies coalescent | SNP | species trees | AFLP | MAXIMUM-LIKELIHOOD-ESTIMATION | PHYLOGENY | DNA-SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENEALOGY | MODEL | POPULATION DIVERGENCE TIMES | DISTRIBUTIONS | EVOLUTIONARY BIOLOGY | GENETICS & HEREDITY | BAYESIAN-INFERENCE | Digitalis - genetics | New Zealand | Likelihood Functions | Algorithms | Species Specificity | Genes, Plant - genetics | Computer Simulation | Alleles | Databases, Genetic | Genetic Markers | Phylogeny | Amplified Fragment Length Polymorphism Analysis
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11. Full Text The Inference of Gene Trees with Species Trees
by Szöllősi, Gergely J and Tannier, Eric and Daubin, Vincent and Boussau, Bastien
Systematic Biology, ISSN 1063-5157, 01/2015, Volume 64, Issue 1, pp. e42 - e62
Abstract This article reviews the various models that have been used to describe the relationships between gene trees and species trees. Molecular phylogeny... 
gene transfer | dynamic programming | hybridization | Algorithm | birth-death model | coalescent | species tree | gene loss | gene duplication | gene tree | maximum likelihood | phylogenetics | amalgamation | Bayesian inference | DNA-SEQUENCES | EVOLUTIONARY TREES | DUPLICATION | BAYESIAN-ESTIMATION | SCALE COESTIMATION | RECOMBINATION | MAXIMUM-LIKELIHOOD | ALGORITHMS | MODEL | GENOME | EVOLUTIONARY BIOLOGY | Phylogeny | Mutation - genetics | Models, Biological | Computer Simulation | Genetic Speciation | Genome - genetics | Life Sciences | Quantitative Methods | Bioinformatics | Computer Science | birth–death model | Mathematical and Computational Evolutionary Biology | Special Issue
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