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The American Journal of Human Genetics, ISSN 0002-9297, 06/2019, Volume 104, Issue 6, pp. 1202 - 1209
The wobble hypothesis was proposed to explain the presence of fewer tRNAs than possible codons. The wobble nucleoside position in the anticodon stem-loop... 
wobble residue | 5-carbamoylmethyl | tRNA modification | anticodon stem-loop | 5-methoxycarbonylmethyl
Journal Article
Electrophoresis, ISSN 0173-0835, 2019, Volume 40, Issue 11, pp. 1600 - 1605
Single nucleotide polymorphisms (SNPs) are one of the most common markers in mammals. Rapid, accurate, and multiplex typing of SNPs is critical for subsequent... 
Multiplex SNP genotyping | Allele-specific PCR | Stem-loop primers
Journal Article
Computational Biology and Chemistry, ISSN 1476-9271, 12/2019, Volume 83, pp. 107100 - 107100
MicroRNAs (miRNAs) are one of the major cytoplasmic tools employed by the eukaryotes for post-transcriptional gene regulation. These ˜21 nt small non-coding... 
Arachis hypogaea | miRNA | Stem-loop | EST | miPEP | Index Medicus
Journal Article
Virus Research, ISSN 0168-1702, 09/2019, Volume 270, pp. 197644 - 197644
In the absence of protein-coding ability, viroid RNAs rely on direct interactions with host factors for their infectivity. RNA structural elements are likely... 
Co-Variation | Hammerhead | Non-Coding RNA | Stem-Loop | Secondary structure | Sequence variability | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 05/2013, Volume 41, Issue 9, pp. 5139 - 5148
The reliable forward engineering of genetic systems remains limited by the ad hoc reuse of many types of basic genetic elements. Although a few intrinsic... 
ELEMENTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI RNA | GENE-EXPRESSION | BACTERIAL GENOMES | POLYMERASE | TRANSLATION INITIATION | REGULATORS | STEM-LOOP | MUTATIONAL ANALYSIS | PREDICTION | Index Medicus | Life Sciences | Biotechnology
Journal Article
Immunity, ISSN 1074-7613, 01/2015, Volume 42, Issue 1, pp. 123 - 132
Journal Article
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, ISSN 0962-8436, 11/2018, Volume 373, Issue 1762, p. 20180170
Metazoan replication-dependent histone mRNAs are the only known cellular mRNAs that are not polyadenylated. Histone mRNAs are present in large amounts only in... 
uridylation | RNA degradation | histone mRNA | cell cycle | UPF1 | DECAY | STEM-LOOP | SURVEILLANCE PATHWAY | 3' END | REPLICATION | NONCODING RNAS | LOOP BINDING-PROTEIN | BIOLOGY | CELL-CYCLE
Journal Article
by Yang, LX and Zhong, ZS and Tong, CL and Jia, H and Liu, YR and Chen, G
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, ISSN 0002-7863, 07/2018, Volume 140, Issue 26, pp. 8172 - 8184
A wobble A.C pair can be protonated at near physiological pH to form a more stable wobble A(+).C pair. Here, we constructed an RNA hairpin (rHP) and three... 
DOUBLE-STRANDED-RNA | BASE-PAIRS | FORCE SPECTROSCOPY | THERMODYNAMICS | STRETCHING DNA | CRYSTAL-STRUCTURE | KINETICS | PSEUDOKNOT | STEM-LOOP | NEAREST-NEIGHBOR MODEL | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
Chemical Physics Letters, ISSN 0009-2614, 09/2017, Volume 684, pp. 239 - 244
Protonation dependent base flipping in RNA has never been studied theoretically. In this work we studied protonation-dependent behavior of the base flipping in... 
GROUP-II INTRON | FREE-ENERGY CALCULATIONS | EWALD | CRYSTAL-STRUCTURE | DNA | INTRAMOLECULAR STEM-LOOP | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | MOLECULAR-DYNAMICS SIMULATIONS | WATER | RNA | Molecular dynamics | Hydrogen
Journal Article
ELECTROPHORESIS, ISSN 0173-0835, 06/2019, Volume 40, Issue 11, pp. 1600 - 1605
Single nucleotide polymorphisms (SNPs) are one of the most common markers in mammals. Rapid, accurate, and multiplex typing of SNPs is critical for subsequent... 
Multiplex SNP genotyping | Stem‐loop primers | Allele‐specific PCR | Pharmacogenetics | Single nucleotide polymorphisms | Nucleotide sequencing | DNA sequencing | Multiplexing | Fluorescent indicators | Pharmacology | Deoxyribonucleic acid--DNA
Journal Article
Bioorganic & Medicinal Chemistry, ISSN 0968-0896, 07/2019, Volume 27, Issue 13, pp. 2972 - 2977
Ribosomal frameshifting, a process whereby a translating ribosome is diverted from one reading frame to another on a contiguous mRNA, is an important... 
MULTIDRUG-RESISTANT | CHEMISTRY, MEDICINAL | SPECIFICITY | AFFINITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | CHEMISTRY, ORGANIC | STEM-LOOP RNA | Antiviral agents | RNA | T cells | HIV (Viruses)
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2018, Volume 46, Issue W1, pp. W221 - W228
Abstract Gene expression regulation is highly dependent on binding of RNA-binding proteins (RBPs) to their RNA targets. Growing evidence supports the notion... 
MESSENGER-RNAS | ELEMENTS | PROTEIN | TARGET SITES | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOME-WIDE ANALYSIS | STEM-LOOP | IDENTIFICATION | WEB SERVER | CLIP | REVEALS | Web Server Issue
Journal Article
by Kong, DR and Liao, FS and Lin, Y and Cheng, L and Peng, H and Zhang, J and Cui, HF and Hong, N and Chen, CD and Wei, GB and Fan, H
SENSORS AND ACTUATORS B-CHEMICAL, ISSN 0925-4005, 08/2018, Volume 266, pp. 288 - 293
A novel electrochemical DNA sensing strategy based on potential-assisted Au-S deposition was presented in this article. Specifically, the 3' terminal of double... 
ELECTROCHEMISTRY | GOLD | CHEMISTRY, ANALYTICAL | Potential-assisted chemisorption | SELF-ASSEMBLED MONOLAYERS | OXIDE | RECOGNITION | STEM-LOOP | Electrochemical DNA sensor | Non-modification-electrode | INSTRUMENTS & INSTRUMENTATION | BIOSENSORS | Homogenous hybridization | PROBE
Journal Article
NATURE STRUCTURAL & MOLECULAR BIOLOGY, ISSN 1545-9993, 06/2014, Volume 21, Issue 6, pp. 544 - 551
The spliceosome is a dynamic assembly of five small nuclear ribonucleoproteins (snRNPs) that removes introns from eukaryotic pre-mRNA. U6, the most conserved... 
GROUP-II INTRON | SPLICEOSOME ACTIVATION | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BINDING MOTIFS | STEM-LOOP | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | BIOPHYSICS | LSM COMPLEX | RNA RECOGNITION MOTIFS | SPLICING FACTOR PRP24 | SM-LIKE PROTEINS
Journal Article
Nanotechnology, ISSN 0957-4484, 05/2018, Volume 29, Issue 29, pp. 295501 - 295501
DNA nanostructure-based fluorescence thermometers were fabricated by linking fluorescent silver nanoclusters (AgNCs) and guanine-rich (G-rich) DNA chains via a... 
DNA stem-loop | thermometer | fluorescence | Ag nanoclusters | PHYSICS, APPLIED | MATERIALS SCIENCE, MULTIDISCIPLINARY | NANOSCIENCE & NANOTECHNOLOGY | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 09/2018, Volume 46, Issue 17, pp. 9170 - 9180
Abstract As adapter molecules to convert the nucleic acid information into the amino acid sequence, tRNAs play a central role in protein synthesis. To fulfill... 
SCATTERING DATA | LACKING | PHENYLALANINE TRANSFER-RNA | CRYSTAL-STRUCTURE | STABILIZATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | SERINE TRANSFER-RNA | STEM-LOOP | ELONGATION-FACTOR-TU | WEB SERVER | MINIMAL TRANSFER-RNA | Life Sciences | RNA and RNA-protein complexes
Journal Article