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Nucleic acids research, ISSN 0305-1048, 2015, Volume 43, Issue 1, pp. W389 - W394
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides... 
FOLD-RECOGNITION | PROFILES | DATABASE | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | 3-DIMENSIONAL STRUCTURES | ACCURACY | Software | Algorithms | Internet | Protein Structure, Secondary | Solvents - chemistry | Web Server issue
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 7/2008, Volume 36, Issue suppl_2, pp. W197 - W201
Jpred (http://www.compbio.dundee.ac.uk/jpred) is a secondary structure prediction server powered by the Jnet algorithm. Jpred performs over 1000 predictions... 
UNIPROT | GENOMICS | ALIGNMENT | DATABASE | PROGRAMS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | GLOBULAR PROTEINS | FOLDS | ACCURACY | TOOL | Sequence Analysis, Protein | User-Computer Interface | Sequence Alignment | Algorithms | Protein Structure, Secondary | Software | Internet
Journal Article
Journal Article
Bioinformatics, ISSN 1367-4803, 2000, Volume 16, Issue 4, pp. 404 - 405
The PSIPRED protein structure prediction sewer allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | FOLD RECOGNITION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Software | Proteins - metabolism | Proteins - chemistry | Protein Structure, Secondary | Protein Folding
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1611, pp. 75 - 95
The ProFunc web server is a tool for helping identify the function of a given protein whose 3D coordinates have been experimentally determined or homology... 
Function prediction | ProFunc | Protein 3D structure | Fold matching | Motifs | Structural templates | Sequence Analysis, Protein | Computational Biology - methods | Databases, Protein | Protein Conformation | Proteins - analysis | Software | Proteins - chemistry
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2005, Volume 33, Issue 2, pp. W72 - W76
SCRATCH is a server for predicting protein tertiary structure and structural features. The SCRATCH software suite includes predictors for secondary structure,... 
SECONDARY STRUCTURE | RECOGNITION | SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | Protein Structure, Tertiary | Proteins - genetics | User-Computer Interface | Protein Structure, Secondary | Disulfides - chemistry | Solvents - chemistry | Protein Conformation | Software | Internet | Mutation | Proteins - chemistry
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2005, Volume 33, Issue 2, pp. W168 - W171
CEP server (http://bioinfo.ernet.in/cep.htm) provides a web interface to the conformational epitope prediction algorithm developed in-house. The algorithm,... 
3-DIMENSIONAL STRUCTURE | COMPLEX | PROTEIN | VIRUS | SPECIFICITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESOLUTION | SITES | ANTIGENIC DETERMINANTS | User-Computer Interface | Algorithms | Epitope Mapping - methods | Protein Conformation | Epitopes - chemistry | Software | Internet | Proteins - chemistry | Software Design | Proteins - immunology
Journal Article
Bioinformatics, ISSN 1367-4803, 1998, Volume 14, Issue 10, pp. 892 - 893
An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted,... 
DOMAIN | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | SEQUENCE ALIGNMENT | REGIONS | BIOCHEMICAL RESEARCH METHODS | ALGORITHMS | IDENTIFICATION | GLOBULAR PROTEINS | BIOLOGY, MISCELLANEOUS | ACCURACY | Consensus Sequence | Sequence Alignment | Algorithms | Protein Structure, Secondary | Computational Biology | Software | Internet
Journal Article
Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, 2007, Volume 69, Issue S8, pp. 68 - 82
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2005, Volume 33, Issue 2, pp. W36 - W38
A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the Bioinformatics Unit at University College... 
SECONDARY STRUCTURE PREDICTION | GENTHREADER | SEQUENCES | DATABASE | FOLD RECOGNITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | Protein Structure, Tertiary | Membrane Proteins - chemistry | Protein Structure, Secondary | Humans | Computational Biology | London | Models, Molecular | Software | Internet | Protein Folding | Polypyrimidine Tract-Binding Protein - chemistry
Journal Article
BMC BIOINFORMATICS, ISSN 1471-2105, 10/2009, Volume 10
Background: Template selection and target-template alignment are critical steps for template-based modeling (TBM) methods. To identify the template for the... 
PROFILES | SUBSTITUTION MATRICES | INFORMATION | BIOCHEMICAL RESEARCH METHODS | CLASSIFICATION | ALIGNMENT | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SECONDARY STRUCTURE | FOLD RECOGNITION | PROGRAM
Journal Article
Future Generation Computer Systems, ISSN 0167-739X, 10/2019, Volume 99, pp. 73 - 85
There is an increasing gap between the number of known protein sequences and the number of proteins with experimentally characterized structure and function.... 
XSEDE science gateway | Protein structure prediction | I-TASSER web-server | Structure-based protein function annotation | Structure-based protein function | annotation
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2011, Volume 27, Issue 10, pp. 1438 - 1439
Motivation: The experimental difficulties of alpha-helical transmembrane protein structure determination make this class of protein an important target for... 
MEMBRANE-PROTEINS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Algorithms | Membrane Proteins - chemistry | Protein Structure, Secondary | Artificial Intelligence | Archaeal Proteins - chemistry | Applications Note
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2012, Volume 40, Issue 1, pp. W298 - W302
Many studies have demonstrated that shape string is an extremely important structure representation, since it is more complete than the classical secondary... 
SECONDARY STRUCTURE PREDICTION | MATRIX | DATABASE | SEARCH | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRUCTURE ALIGNMENT | Sequence Analysis, Protein | Protein Conformation | Sequence Alignment | Software | Internet
Journal Article