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Methods in Molecular Biology, ISSN 1064-3745, 2019, Volume 1871, pp. 455 - 465
Data-independent acquisition (DIA) mode of mass spectrometry, such as the SWATH-MS technology, enables accurate and consistent measurement of proteins, which... 
DDA | Data analysis | Spectral library | Proteomics | SWATH-MS | DIA | Mass spectrometry
Journal Article
Talanta, ISSN 0039-9140, 12/2019, Volume 205, p. 120163
The label-free quantitative mass spectrometry methods, in particular, the SWATH-MS approach, have gained popularity and became a powerful technique for... 
SWATH-MS | Proteomics screening | Biofluids | Data normalization | Internal standard | CHEMISTRY, ANALYTICAL | MASS-SPECTROMETRY | STANDARD | TOOL
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 06/2019, Volume 18, Issue 6, pp. 2525 - 2534
An important area of modern biology consists of understanding the relationship between genotype and phenotype. However, to understand this relationship it is... 
embryo | SWATH-MS | proteomics | Drosophila melanogaster | post-transcriptional regulation | adult fly | COMPLEX | PHOSPHORYLATION | QUANTIFICATION | BIOCHEMICAL RESEARCH METHODS | DYNAMICS | EXPRESSION | ASSOCIATION
Journal Article
by Chen, XL and Rao, J and Zheng, Z and Yu, Y and Lou, S and Liu, LP and He, QS and Wu, LH and Sun, XH
JOURNAL OF PROTEOME RESEARCH, ISSN 1535-3893, 05/2019, Volume 18, Issue 5, pp. 2321 - 2330
Dry eye syndrome (DES) is a growing public health concern with a high global prevalence; however, the fundamental processes involved in its pathogenic... 
DIAGNOSIS | CELLS | ACID | proteomics | QUANTITATIVE PROTEOMICS | ANTIOXIDANTS | inflammatory | AQUEOUS-HUMOR | BIOCHEMICAL RESEARCH METHODS | SWATH-MS | SWATH | dry eye | metabolomics | DISEASE
Journal Article
by Yan, ZX and Yan, R
ANALYTICAL CHEMISTRY, ISSN 0003-2700, 04/2018, Volume 90, Issue 7, pp. 4380 - 4388
Maximizing the recovery of meaningful biological information can facilitate proteomics-guided early detection and precise treatment of diseases. However, the... 
CHEMISTRY, ANALYTICAL | FRACTIONATION | SWATH-MS DATA | THYROID-TUMORS | LIBRARY | PATTERNS | SERUM | LARGE PEPTIDES | TANDEM MASS-SPECTROMETRY | INFERENCE | CANCER
Journal Article
Histology and histopathology, ISSN 0213-3911, 05/2019, Volume 34, Issue 5, pp. 479 - 490
Introduction. Port wine stain (PWS) is characterized as a progressive dilatation of immature venule-like vasculatures which result from... 
CELLS | ACTIVATION | SWATH-MS | PATHOLOGY | Exocytosis | Endothelial cells | CELL BIOLOGY | Vascular malformations | Port wine stain | MUTATION | SUPPRESSES | Extracellular vesicle | KINASES
Journal Article
Journal of Proteomics, ISSN 1874-3919, 07/2019, Volume 204, p. 103391
Intrauterine growth restriction (IUGR) is characterized by reduced growth and weight of the foetus, mainly due to the lack of nutrients and oxygen. Animals... 
Intrauterine growth restriction | SWATH-MS | Hippocampus | Proteomics | Sex | Pig | PHOSPHORYLATION | BIOCHEMICAL RESEARCH METHODS | SHEEP | TROPOMYOSIN | FETAL | PROTEINS | BRAIN | HORMONES
Journal Article
Molecular and Cellular Proteomics, ISSN 1535-9476, 2019, Volume 18, Issue 6, pp. 1242 - 1254
Comprehensive, high throughput analysis of the plasma proteome has the potential to enable holistic analysis of the health state of an individual. Based on our... 
Absolute quantification | stable isotope standards | SWATH-MS | Research | Plasma or serum analysis | Clinical proteomics | high throughput | single shot | Label-free quantification | data-independent acquisition
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 04/2018, Volume 17, Issue 4, pp. 1647 - 1653
Modern beer production is a complex industrial process. However, some of its biochemical details remain unclear. Using mass spectrometry proteomics, we have... 
QUALITY | BIOCHEMICAL RESEARCH METHODS | SWATH-MS | SWATH | GLYCOSYLATION | wort | MASS-SPECTROMETRY | malt | LC-MS/MS | relative quantification | post-translational modifications | PROTEINS | beer
Journal Article
Molecular Systems Biology, ISSN 1744-4292, 02/2015, Volume 11, Issue 2, pp. 786 - n/a
Journal Article
Analytical Chemistry, ISSN 0003-2700, 10/2017, Volume 89, Issue 19, pp. 10248 - 10255
Data-independent acquisition (DIA) has recently emerged as a powerful quantitative approach for large-scale proteome quantification, providing a sensitive and... 
CHEMISTRY, ANALYTICAL | SWATH-MS | PEPTIDES | QUANTITATIVE PROTEOMICS | SPECTRA | SPECTROMETRY | Proteins | Cell culture | Usage | Lysine | Proteomics | Research | Isotopes | Mass spectrometry
Journal Article
Journal of Proteomics, ISSN 1874-3919, 08/2019, Volume 205, p. 103422
The positive perception of deer meat among consumers is growing. Consequently, further efforts are needed to control its meat quality. Specifically, the aim of... 
Water-holding capacity | Protein biomarkers | SWATH-MS | Tenderness | Intramuscular fat | ATTRIBUTES | PROTEIN | SLAUGHTER | BIOCHEMICAL RESEARCH METHODS | MUSCLE | DAMA-DAMA | COLOR | BIOCHEMISTRY | DEPHOSPHORYLATION | LONGISSIMUS-THORACIS | CARCASS
Journal Article
Veterinary Immunology and Immunopathology, ISSN 0165-2427, 07/2019, Volume 213, p. 109880
Haemorrhagic enteritis (HE) is a viral disease affecting intestinal integrity and barrier function in turkey ( ) and resulting in a significant economic loss.... 
Haemorrhagic enteritis virus | SWATH-MS | Intestine | Meleagris gallopavo | Proteomics | IMMUNITY | ACTIVATION | CALNEXIN | MODEL | IMMUNOLOGY | BLOOD MONONUCLEAR-CELLS | HEMOPEXIN | SELENIUM | PATHOGENESIS | ACUTE-PHASE PROTEINS | VETERINARY SCIENCES | EXPRESSION
Journal Article