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1. Full Text Single‐cell dynamics of mast cell–CD4+CD25+ regulatory T cell interactions
by Frossi, Barbara and D'Incà, Federica and Crivellato, Enrico and Sibilano, Riccardo and Gri, Giorgia and Mongillo, Marco and Danelli, Luca and Maggi, Laura and Pucillo, Carlo E
European Journal of Immunology, ISSN 0014-2980, 07/2011, Volume 41, Issue 7, pp. 1872 - 1882
The biological behavior of immune cells is determined by their intrinsic properties and interactions with other cell populations within their microenvironment.... 
Piecemeal degranulation | Mast cell | Cell–cell interaction | Treg | Cell-cell interaction | ACTIVATION | FC-EPSILON-RI | IMMUNOLOGY | EFFECTOR | RESPONSES | COSTIMULATION | TNF-ALPHA | SECRETION | DIFFERENTIATION | IMMUNOLOGICAL SYNAPSE | EXPRESSION | Mast Cells - immunology | Microscopy, Electron, Transmission | T-Lymphocytes, Regulatory - metabolism | Mast Cells - ultrastructure | Cell Degranulation | Calcium - metabolism | OX40 Ligand - metabolism | Coculture Techniques | Humans | Mice, Inbred C57BL | T-Lymphocytes, Regulatory - ultrastructure | Cytokines - secretion | Cell Communication | Mast Cells - physiology | Microscopy, Video | Mice, Knockout | T-Lymphocytes, Regulatory - immunology | Receptors, OX40 - metabolism | Animals | CD4 Antigens - analysis | Cell Line, Tumor | Interleukin-2 Receptor alpha Subunit - analysis | Mice | Single-Cell Analysis | Microscopy | Medical research | Cells | Index Medicus
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2. Full Text Single-cell transcriptomes identify human islet cell signatures and reveal cell-type-specific expression changes in type 2 diabetes
by Lawlor, Nathan and George, Joshy and Bolisetty, Mohan and Kursawe, Romy and Sun, Lili and Sivakamasundari, V and Kycia, Ina and Robson, Paul and Stitzel, Michael L
Genome Research, ISSN 1088-9051, 02/2017, Volume 27, Issue 2, pp. 208 - 222
Blood glucose levels are tightly controlled by the coordinated action of at least four cell types constituting pancreatic islets. Changes in the proportion... 
CONGENITAL HYPERINSULINISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | INSULIN-SECRETION | SURFACE-MARKERS | ENDOCRINE PANCREAS | PYRUVATE-CARBOXYLASE | GLUCOSE-METABOLISM | ENERGY HOMEOSTASIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | EPIGENETIC REGULATION | PANCREATIC BETA-CELL | RNA-SEQ DATA | Carrier Proteins - genetics | Islets of Langerhans - pathology | Gene Expression Regulation - genetics | Islets of Langerhans - metabolism | Diabetes Mellitus, Type 2 - genetics | Humans | Gene Expression Profiling - methods | Signal Transduction - genetics | Transcriptome - genetics | Diabetes Mellitus, Type 2 - pathology | Single-Cell Analysis | Index Medicus | Research
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3. Full Text Investigating cell‐substrate and cell–cell interactions by means of single‐cell‐probe force spectroscopy
by Moreno‐Cencerrado, Alberto and Iturri, Jagoba and Pecorari, Ilaria and D.M. Vivanco, Maria and Sbaizero, Orfeo and Toca‐Herrera, José L
Microscopy Research and Technique, ISSN 1059-910X, 01/2017, Volume 80, Issue 1, pp. 124 - 130
Cell adhesion forces are typically a mixture of specific and nonspecific cell‐substrate and cell–cell interactions. In order to resolve these phenomena, Atomic... 
force spectroscopy | single‐cell probe | atomic force microscopy | cell adhesion | S‐layer proteins | S-layer proteins | single-cell probe | ATTACHMENT | ELASTIC PROPERTIES | ANATOMY & MORPHOLOGY | INDENTATION | AFM | MICROSCOPY | GUIDE | LAYERS | ADHESION | LIGANDS | BIOLOGY | SURFACES | Fibronectins - chemistry | MCF-7 Cells | Humans | Surface Properties | Bacterial Proteins - chemistry | Cell Communication | Microscopy, Atomic Force | Protein Binding | Monosaccharide Transport Proteins - chemistry | Cell Adhesion | Fibronectins | Atomic force microscopy | Spectrum analysis | Analysis | Investigations | Integrins | Index Medicus | Binding | Spectroscopy | Recrystallization | Breast | Bacteria | Coating | Devices | Fibronectin
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4. Full Text Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
by Nagano, Takashi and Lubling, Yaniv and Stevens, Tim J and Schoenfelder, Stefan and Yaffe, Eitan and Dean, Wendy and Laue, Ernest D and Tanay, Amos and Fraser, Peter
Nature, ISSN 0028-0836, 2013, Volume 502, Issue 7469, pp. 59 - 64
Large-scale chromosome structure and spatial nuclear arrangement have been linked to control of gene expression and DNA replication and repair. Genomic... 
Molecular Conformation | Models, Molecular | Male | X Chromosome - chemistry | Genetic Techniques | Animals | Cell Nucleus - genetics | Chromosomes - genetics | Chromosomes - chemistry | Mice | Single-Cell Analysis | X Chromosome - genetics | Chromatin - chemistry | NUCLEAR-ORGANIZATION | ASSOCIATIONS | LANDSCAPE | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | TERRITORIES | ARCHITECTURE | GENE-REGULATION | CONFORMATION | YEAST GENOME | PRINCIPLES | Index Medicus
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5. Full Text Single‐Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16‐Cell Frog (Xenopus) Embryo
by Lombard‐Banek, Camille and Moody, Sally A and Nemes, Peter
Angewandte Chemie International Edition, ISSN 1433-7851, 02/2016, Volume 55, Issue 7, pp. 2454 - 2458
We advance mass spectrometry from a cell population‐averaging tool to one capable of quantifying the expression of diverse proteins in single embryonic cells.... 
embryo | mass spectrometry | single-cell studies | proteins | Xenopus laevis | LAEVIS EMBRYOS | YEAST PROTEOME | BLASTOMERES | CHEMISTRY, MULTIDISCIPLINARY | ASYMMETRY | PEPTIDES | EXPRESSION | MAP | FATES | ORGANIZER | Embryo, Nonmammalian - cytology | Animals | Spectrometry, Mass, Electrospray Ionization - methods | Xenopus - embryology | Proteomics | Proteins | Embryonic development | Embryo | Mass spectrometry | Amphibians | Translation | Blastomeres | Transcription | Capillary electrophoresis | Tools | Ions | Mass spectroscopy | Axes (reference lines) | Heterogeneity | Developmental stages | Ionization | Electrophoresis | Scientific imaging | Index Medicus | Communications | Communication
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6. Full Text TrackMate: An open and extensible platform for single-particle tracking
by Tinevez, Jean-Yves and Perry, Nick and Schindelin, Johannes and Hoopes, Genevieve M and Reynolds, Gregory D and Laplantine, Emmanuel and Bednarek, Sebastian Y and Shorte, Spencer L and Eliceiri, Kevin W
Methods, ISSN 1046-2023, 02/2017, Volume 115, pp. 80 - 90
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and manual tracking of single-particles. It offers a versatile and modular... 
Phototoxicity | Open-source software | Image analysis | Single-particle tracking | Microscopy | Clathin-mediated endocytosis | SYSTEM | CLATHRIN-MEDIATED ENDOCYTOSIS | TPLATE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | TRANSPORT | DYNAMICS | ARABIDOPSIS | CELL | EMBRYOGENESIS | Image Processing, Computer-Assisted - statistics & numerical data | Plant Cells - metabolism | Adaptor Proteins, Vesicular Transport - genetics | Cell Tracking - methods | Embryo, Nonmammalian - metabolism | Arabidopsis - ultrastructure | Clathrin - genetics | Adaptor Proteins, Vesicular Transport - metabolism | Fibroblasts - ultrastructure | Cell Tracking - statistics & numerical data | Clathrin - metabolism | Arabidopsis - metabolism | Caenorhabditis elegans | Endocytosis | Algorithms | Animals | Light Signal Transduction | Single-Cell Analysis - statistics & numerical data | Single-Cell Analysis - methods | Embryo, Nonmammalian - ultrastructure | Plant Cells - ultrastructure | Gene Expression Regulation, Plant | Software | Fibroblasts - metabolism | Index Medicus | Single-Cell Analysis/methods | Arabidopsis/metabolism | Embryo, Nonmammalian/ultrastructure | Cellular Biology | Life Sciences | Clathrin/genetics | Fibroblasts/metabolism | Cell Tracking/methods | Plant Cells/metabolism | Cell Tracking/statistics & numerical data | Arabidopsis/ultrastructure | Image Processing, Computer-Assisted/statistics & numerical data | Embryo, Nonmammalian/metabolism | Adaptor Proteins, Vesicular Transport/genetics | Clathrin/metabolism | Plant Cells/ultrastructure | Single-Cell Analysis/statistics & numerical data | Fibroblasts/ultrastructure | Adaptor Proteins, Vesicular Transport/metabolism
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7. Full Text Live-cell time-lapse imaging and single-cell tracking of in vitro cultured neural stem cells – Tools for analyzing dynamics of cell cycle, migration, and lineage selection
by Piltti, Katja M and Cummings, Brian J and Carta, Krystal and Manughian-Peter, Ayla and Worne, Colleen L and Singh, Kulbir and Ong, Danier and Maksymyuk, Yuriy and Khine, Michelle and Anderson, Aileen J
Methods, ISSN 1046-2023, 01/2018, Volume 133, pp. 81 - 90
Neural stem cell (NSC) cultures have been considered technically challenging for time-lapse analysis due to high motility, photosensitivity, and growth at... 
Single-cell tracking | Fate mapping | Human neural stem cell | Live-cell imaging | Cell lineage decision | Cell cycle | NERVOUS-SYSTEM | BEHAVIOR | ZONE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | FATE | DIVISION | DIFFERENTIATION | Fluorescence | Usage | Stem cells | Index Medicus
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8. Full Text Single-cell transcriptome analysis of CD34+stem cell-derived myeloid cells infected with human cytomegalovirus
by Galinato, Melissa and Shimoda, Kristen and Aguiar, Alexis and Hennig, Fiona and Boffelli, Dario and McVoy, Michael A and Hertel, Laura
Frontiers in Microbiology, ISSN 1664-302X, 2019, Volume 10, pp. 577 - 577
Myeloid cells are important sites of lytic and latent infection by human cytomegalovirus (CMV). We previously showed that only a small subset of myeloid cells... 
Tropism | Cytomegalovirus | 10× genomics | Myeloid | RNAseq | Single-cell | PROGENITOR CELLS | LATENT INFECTION | DENDRITIC CELLS | CORD BLOOD | tropism | MICROBIOLOGY | EX-VIVO EXPANSION | IN-VITRO | INTERFERON RESPONSE | cytomegalovirus | myeloid | single-cell | GENE-EXPRESSION | ENDOPLASMIC-RETICULUM | 10x genomics | HEMATOPOIETIC STEM
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9. Full Text Quantitating cell-cell interaction functions with applications to glioblastoma multiforme cancer cells
by Wang, Jun and Tham, Douglas and Wei, Wei and Shin, Young Shik and Ma, Chao and Ahmad, Habib and Shi, Qihui and Yu, Jenkan and Levine, Raphael D and Heath, James R
Nano Letters, ISSN 1530-6984, 12/2012, Volume 12, Issue 12, pp. 6101 - 6106
We report on a method for quantitating the distance dependence of cell-cell interactions. We employ a microchip design that permits a multiplex, quantitative... 
cell interactions | glioblastoma multiforme | microfluidics | single cell proteomics | PHYSICS, CONDENSED MATTER | PHYSICS, APPLIED | MATERIALS SCIENCE, MULTIDISCIPLINARY | CHEMISTRY, PHYSICAL | NANOSCIENCE & NANOTECHNOLOGY | CHEMISTRY, MULTIDISCIPLINARY | SINGLE-CELL | GROWTH | PROTEINS | Brain Neoplasms - enzymology | Glioblastoma - enzymology | Signal Transduction | Humans | Cell Communication | Cell Line, Tumor | Glioblastoma - metabolism | Lab-On-A-Chip Devices | Phosphatidylinositol 3-Kinases - metabolism | Equipment Design | Brain Neoplasms - metabolism | Index Medicus | Multiplexing | Proteins | Brain | Separation | Mathematical models | Nanostructure | Assaying | Cancer
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10. Full Text The Myeloid Cell Compartment-Cell by Cell
by Bassler, Kevin and Schulte-Schrepping, Jonas and Warnat-Herresthal, Stefanie and Aschenbrenner, Anna C and Schultze, Joachim L
Annual Review of Immunology, ISSN 0732-0582, 4/2019, Volume 37, Issue 1, pp. 269 - 293
Myeloid cells are a major cellular compartment of the immune system comprising monocytes, dendritic cells, tissue macrophages, and granulocytes. Models of... 
single-cell RNA sequencing | monocytes | macrophages | myeloid cells | dendritic cells | single-cell analysis | ANALYSIS REVEALS | MACROPHAGE ONTOGENY | ALZHEIMERS-DISEASE | HEMATOPOIETIC STEM-CELL | CLONOGENIC PROGENITOR | IMMUNOLOGY | LANGERHANS CELLS | PLASMACYTOID DENDRITIC CELLS | LINEAGE COMMITMENT | RNA-SEQ | MONOCYTE DIFFERENTIATION | RNA sequencing | Dendritic cells | Analysis
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