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PloS one, ISSN 1932-6203, 2013, Volume 8, Issue 5, p. e63103
Background: Molecular biological modalities with better detection rates have been applied to identify the bacteria causing infectious diseases. Approximately... 
PULMONARY INFECTIONS | SEQUENCE-ANALYSIS | ETIOLOGY | DIAGNOSIS | MANAGEMENT | FIBEROPTIC BRONCHOSCOPY | MULTIDISCIPLINARY SCIENCES | MICROBIOME | GUIDELINES | ADULTS | BRONCHOALVEOLAR LAVAGE | Sputum - microbiology | Humans | Middle Aged | Pneumonia, Mycoplasma - microbiology | Pneumonia, Pneumococcal - diagnosis | Male | Bacteria, Anaerobic - genetics | Haemophilus Infections - diagnosis | Molecular Typing | Bronchoalveolar Lavage Fluid - microbiology | Young Adult | Molecular Diagnostic Techniques | Aged, 80 and over | RNA, Bacterial - genetics | Adult | Female | Pneumonia, Pneumococcal - microbiology | Sequence Analysis, DNA | Mouth - microbiology | Adolescent | Haemophilus Infections - microbiology | RNA, Ribosomal, 16S - genetics | Aged | Community-Acquired Infections - microbiology | Pneumonia, Mycoplasma - diagnosis | Bronchoscopy | Bacteria | Ribosomal RNA | Analysis | Pneumonia | rRNA 16S | Microbiology | Laboratories | Identification methods | Communities | Ribosomal DNA | Homology | Infections | Microbiota | Anaerobes | Primers | Bronchoalveolar lavage | Lesions | Alveoli | Library collections | Pathogens | Ventilators | Antigens | Approximation | Cultivation | Base pairs | Cloning | Environmental health | Bronchus | Ribonucleic acid--RNA | Patients | Catheters | Medicine | Polymerase chain reaction | Gene amplification | Hospitals | Infectious diseases | RNA | Ribonucleic acid
Journal Article
Journal of allergy and clinical immunology, ISSN 0091-6749, 2018, Volume 141, Issue 1, pp. 94 - 103.e15
Journal Article
Pediatrics (Evanston), ISSN 1098-4275, 2006, Volume 118, Issue 2, pp. 469 - 474
OBJECTIVES. We conducted this study to assess the rate of methicillin-resistant Staphylococcus aureus colonization and its association with infection among... 
Infection | Neonatal intensive care unit | Genotyping analysis | Methicillin-resistant Staphylococcus aureus | Colonization | infection | TAIWAN | methicillin-resistant Staphylococcus aureus | RISK | INTRANASAL MUPIROCIN | CARRIERS | CHILDREN | genotyping analysis | colonization | neonatal intensive care unit | BACTEREMIA | DOUBLE-BLIND | SURVEILLANCE | PEDIATRICS | NASAL CARRIAGE | EPIDEMIOLOGY | Sputum - microbiology | Carrier State - epidemiology | Skin - microbiology | Hospitals, Pediatric - statistics & numerical data | Humans | Carrier State - microbiology | Infant | Male | Intensive Care Units, Neonatal - statistics & numerical data | Bacteremia - microbiology | Bacterial Typing Techniques | Patient Isolation | DNA, Bacterial - analysis | Female | Staphylococcal Infections - microbiology | Infant, Premature, Diseases - epidemiology | Methicillin Resistance | Infant, Newborn | Cross Infection - epidemiology | Staphylococcus aureus - genetics | Hospitals, University - statistics & numerical data | Staphylococcus aureus - isolation & purification | Infant, Premature, Diseases - microbiology | Ear, External - microbiology | Gestational Age | Umbilicus - microbiology | Birth Weight | Staphylococcal Infections - epidemiology | Axilla - microbiology | Cross Infection - microbiology | Infant, Premature | Taiwan - epidemiology | Bacteremia - epidemiology | Nose - microbiology | Staphylococcus aureus - drug effects | Staphylococcal infections | Causes of | Children | Diagnosis | Comparative analysis | Health aspects | Staphylococcus aureus | Risk factors | Confidence intervals | Pediatrics | Genotype & phenotype | Intensive care | Infections | Drug resistance | Disease control | Children & youth
Journal Article
PloS one, ISSN 1932-6203, 2014, Volume 9, Issue 6, p. e100645
Journal Article
Annals of the American Thoracic Society, ISSN 2325-6621, 02/2015, Volume 12, Issue 2, pp. 221 - 229
Journal Article
by Park, Daniel E and Baggett, Henry C and Howie, Stephen R. C and Shi, Qiyuan and Watson, Nora L and Brooks, W. Abdullah and Deloria Knoll, Maria and Hammitt, Laura L and Kotloff, Karen L and Levine, Orin S and Madhi, Shabir A and Murdoch, David R and O’Brien, Katherine L and Scott, J. Anthony G and Thea, Donald M and Ahmed, Dilruba and Antonio, Martin and Baillie, Vicky L and DeLuca, Andrea N and Driscoll, Amanda J and Fu, Wei and Gitahi, Caroline W and Olutunde, Emmanuel and Higdon, Melissa M and Hossain, Lokman and Karron, Ruth A and Maiga, Abdoul Aziz and Maloney, Susan A and Moore, David P and Morpeth, Susan C and Mwaba, John and Mwenechanya, Musaku and Prosperi, Christine and Sylla, Mamadou and Thamthitiwat, Somsak and Zeger, Scott L and Feikin, Daniel R and O’Brien, Katherine L and Levine, Orin S and Knoll, Maria Deloria and Feikin, Daniel R and DeLuca, Andrea N and Driscoll, Amanda J and Fancourt, Nicholas and Fu, Wei and Hammitt, Laura L and Higdon, Melissa M and Wangeci Kagucia, E and Karron, Ruth A and Li, Mengying and Park, Daniel E and Prosperi, Christine and Wu, Zhenke and Zeger, Scott L and Watson, Nora L and Crawley, Jane and Murdoch, David R and Abdullah Brooks, W and Endtz, Hubert P and Zaman, Khalequ and Goswami, Doli and Hossain, Lokman and Jahan, Yasmin and Ashraf, Hasan and Howie, Stephen R. C and Ebruke, Bernard E and Antonio, Martin and McLellan, Jessica and Machuka, Eunice and Shamsul, Arifin and Zaman, Syed M.A and Mackenzie, Grant and Scott, J. Anthony G and Awori, Juliet O and Morpeth, Susan C and Kamau, Alice and Kazungu, Sidi and Ominde, Micah Silaba and Kotloff, Karen L and Tapia, Milagritos D and Sow, Samba O and Sylla, Mamadou and Tamboura, Boubou and Onwuchekwa, Uma and Kourouma, Nana and Toure, Aliou and Madhi, Shabir A and Moore, David P and Adrian, Peter V and Baillie, Vicky L and Kuwanda, Locadiah and Mudau, Azwifarwi and Groome, Michelle J and Mahomed, Nasreen and Baggett, Henry C and Thamthitiwat, Somsak and Maloney, Susan A and Bunthi, Charatdao and Rhodes, Julia and Sawatwong, Pongpun and ... and for the PERCH Study Group and Perch Study Grp and PERCH Study Group
Clinical infectious diseases, ISSN 1537-6591, 2017, Volume 64, Issue suppl_3, pp. S328 - S336
Background. There is limited information on the association between colonization density of upper respiratory tract colonizers and pathogen-specific pneumonia.... 
PERCH | Colonization density | Pneumonia | CHILDHOOD PNEUMONIA | INFECTIOUS DISEASES | colonization density | QUANTITATIVE PCR | MICROBIOLOGY | IMMUNOLOGY | ETIOLOGY RESEARCH | CHILDREN | REAL-TIME PCR | STREPTOCOCCUS-PNEUMONIAE | STANDARDIZED INTERPRETATION | pneumonia | BACTERIAL-COLONIZATION | CHEST RADIOGRAPHS | INDUCED SPUTUM SPECIMENS | Pneumonia, Pneumocystis - diagnosis | Humans | Pneumonia, Bacterial - etiology | Child, Preschool | Infant | Male | Pneumonia, Staphylococcal - microbiology | Haemophilus Infections - diagnosis | Respiratory Tract Infections - microbiology | Polymerase Chain Reaction | Female | Moraxella (Branhamella) catarrhalis - isolation & purification | Nasopharynx - microbiology | Pneumocystis carinii - isolation & purification | Haemophilus influenzae - growth & development | Pneumocystis carinii - genetics | Staphylococcus aureus - genetics | Oropharynx - microbiology | Pneumonia, Bacterial - microbiology | Staphylococcus aureus - isolation & purification | Moraxellaceae Infections - microbiology | Haemophilus influenzae - genetics | Moraxella (Branhamella) catarrhalis - genetics | Pneumonia, Bacterial - diagnosis | Moraxella (Branhamella) catarrhalis - growth & development | Haemophilus influenzae - isolation & purification | Pneumonia, Staphylococcal - diagnosis | Haemophilus Infections - microbiology | Pneumonia, Bacterial - diagnostic imaging | ROC Curve | Pneumocystis carinii - growth & development | Moraxellaceae Infections - diagnosis | Pneumonia, Pneumocystis - microbiology | Staphylococcus aureus - growth & development | Supplement
Journal Article
Clinical infectious diseases, ISSN 1537-6591, 2011, Volume 52, Issue 9, pp. 1123 - 1129
Background. Oral triazole therapy is well established for the treatment of invasive (IPA), allergic (ABPA), and chronic pulmonary (CPA) aspergillosis and is... 
Polymerase chain reaction | Antifungals | Aspergillus | Azoles | Triazoles | Aspergillosis | Sputum | ARTICLES AND COMMENTARIES | Allergic bronchopulmonary aspergillosis | Aspergillus fumigatus | Genetic mutation | DIAGNOSIS | INFECTIOUS DISEASES | SEVERE ASTHMA | MICROBIOLOGY | ITRACONAZOLE | IMMUNOLOGY | TRIAL | INVASIVE ASPERGILLOSIS | PULMONARY ASPERGILLOSIS | SENSITIZATION | AZOLE RESISTANCE | ALLERGIC BRONCHOPULMONARY ASPERGILLOSIS | PCR | Aspergillus fumigatus - drug effects | Sputum - microbiology | Lung - microbiology | Aspergillosis, Allergic Bronchopulmonary - microbiology | Humans | Aspergillosis, Allergic Bronchopulmonary - drug therapy | Antifungal Agents - therapeutic use | Bronchoalveolar Lavage Fluid - microbiology | Aspergillus fumigatus - isolation & purification | Culture Media | Polymerase Chain Reaction | Aspergillosis, Allergic Bronchopulmonary - epidemiology | Invasive Pulmonary Aspergillosis - epidemiology | Triazoles - therapeutic use | Antifungal Agents - pharmacology | Invasive Pulmonary Aspergillosis - drug therapy | Pulmonary Aspergillosis - drug therapy | DNA, Fungal - analysis | Drug Resistance, Fungal - genetics | Aspergillus fumigatus - genetics | Pulmonary Aspergillosis - microbiology | Triazoles - pharmacology | Pulmonary Aspergillosis - epidemiology | Invasive Pulmonary Aspergillosis - microbiology | Mutation | Chronic Disease | Drug resistance in microorganisms | Usage | Physiological aspects | Causes of | Lung diseases, Fungal | Research | Drug therapy | Health aspects | and Commentaries
Journal Article
Current Opinion in Pulmonary Medicine, ISSN 1070-5287, 11/2018, Volume 24, Issue 6, pp. 599 - 605
PURPOSE OF REVIEWThe major problem for cystic fibrosis patients is the recurrent and chronic infections of the lungs, determining their prognosis. The... 
molecular diagnostics | RESPIRATORY VIRUSES | clinical diagnostics | next-generation sequencing | whole-genome sequencing | LUNGS | ADULTS | 16S | MYCOBACTERIUM-ABSCESSUS | lung microbiota | INDUCED SPUTUM | RESPIRATORY SYSTEM | INFANTS | INFECTION | YOUNG-CHILDREN | Cystic fibrosis | Bacterial infections | Research | Microbiota (Symbiotic organisms)
Journal Article