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1. Full Text Type III Polyketide Synthases: Functional Classification and Phylogenomics
by Shimizu, Yugo and Ogata, Hiroyuki and Goto, Susumu
ChemBioChem, ISSN 1439-4227, 01/2017, Volume 18, Issue 1, pp. 50 - 65
Polyketide synthases (PKSs) catalyze the sequential condensation of simple acetate units to produce a large class of natural products, including... 
enzyme reaction classification | polyketides | phylogenomic distribution | genome mining | biosynthesis | MYCOBACTERIUM-TUBERCULOSIS | CHEMISTRY, MEDICINAL | RICE ORYZA-SATIVA | BIOCHEMISTRY & MOLECULAR BIOLOGY | STILBENE SYNTHASE | SITE-DIRECTED MUTAGENESIS | CHALCONE SYNTHASE | CHAIN-LENGTH CONTROL | BIOSYNTHETIC GENE CLUSTERS | PHENOLIC LIPID-SYNTHESIS | I FATTY-ACID | STREPTOMYCES-GRISEUS | Multigene Family | Polyketide Synthases - metabolism | Polyketide Synthases - classification | Fungi - enzymology | Substrate Specificity | Bacteria - enzymology | Phylogeny | Polyketide Synthases - genetics | Plants - enzymology
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2. Full Text Reassessment of chitosanase substrate specificities and classification
by Weikert, Tobias and Niehues, Anna and Cord-Landwehr, Stefan and Hellmann, Margareta J and Moerschbacher, Bruno M
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, pp. 1698 - 11
Chitosanases can be used to produce partially acetylated chitosan oligosaccharides (paCOS) for different applications, provided they are thoroughly... 
AFFINITY PROTEIN | ACID-SEQUENCE SIMILARITIES | ENZYMATIC PRODUCTION | STREPTOMYCES-COELICOLOR A3 | ACETYLATED CHITOSAN | PECTIN LYASE | MULTIDISCIPLINARY SCIENCES | PURIFICATION | CHITO-OLIGOSACCHARIDES | BIOLOGICAL-ACTIVITIES | GLYCOSYL HYDROLASES | Enzymes | Classification | Chitosanase | Pectin | Chitosan | Acetylation | Oligosaccharides | Substrates
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3. Numerical taxonomy of Streptomycetes
: classification of Streptomycetes by different numerical methods
by Kuryłowicz, Włodzimierz
1975, 109
Streptomyces | Classification | Gyllenberg, H. G
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4. Full Text Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov
by Rong, Xiaoying and Doroghazi, James R and Cheng, Kun and Zhang, Limin and Buckley, Daniel H and Huang, Ying
Systematic and Applied Microbiology, ISSN 0723-2020, 09/2013, Volume 36, Issue 6, pp. 401 - 407
The phylogroup pratensis (Doroghazi and Buckley, 2010) contains isolates obtained from grassy fields, as well as ATCC 33331 and strain CGMCC 4.1868. This... 
Phenotypic characteristics | 16S rRNA | MLSA | DDH | Streptomyces phylogroup pratensis | Streptomyces pratensis sp. nov | DEOXYRIBONUCLEIC-ACID | PHYLOGENIES | NUMERICAL CLASSIFICATION | TAXONOMIC EVALUATION | MICROBIOLOGY | CLADE | MULTILOCUS SEQUENCE-ANALYSIS | DNA-DNA HYBRIDIZATION | RIBOSOMAL-RNA SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SYSTEMATICS | Streptomyces pratensis sp nov | DIVERSITY | Nucleic Acid Hybridization | Streptomyces - physiology | Streptomyces - genetics | Bacterial Proteins - genetics | Molecular Sequence Data | DNA, Bacterial - chemistry | Phylogeny | DNA, Ribosomal - chemistry | Genes, Essential | Sequence Analysis, DNA | Streptomyces - isolation & purification | DNA, Bacterial - genetics | Streptomyces - classification | Environmental Microbiology | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Cluster Analysis | DNA, Ribosomal - genetics | RNA
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5. Full Text The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family
by Staron, A and Sofia, HJ and Dietrich, S and Ulrich, LE and Liesegang, H and Mascher, T
MOLECULAR MICROBIOLOGY, ISSN 0950-382X, 11/2009, Volume 74, Issue 3, pp. 557 - 581
P>The ability of a bacterial cell to monitor and adaptively respond to its environment is crucial for survival. After one- and two-component systems,... 
MYCOBACTERIUM-TUBERCULOSIS | STREPTOMYCES-COELICOLOR A3 | MBTH-LIKE PROTEIN | BACILLUS-SUBTILIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI K-12 | REGULATORY NETWORK | MICROBIOLOGY | ENVELOPE STRESS-RESPONSE | HRP REGULON | RNA-POLYMERASE | CORYNEBACTERIUM-GLUTAMICUM | Protein Kinases - metabolism | Sigma Factor - classification | Sigma Factor - metabolism | Protein Kinases - genetics | Virulence Factors - genetics | Genomics | Gene Expression Profiling | RNA, Bacterial - genetics | Sigma Factor - genetics | Mycobacterium tuberculosis - metabolism | Amino Acid Sequence | Genes, Bacterial | Bacteria - metabolism | Genome, Bacterial | Bacterial Proteins - genetics | Protein Structure, Tertiary - genetics | Signal Transduction - genetics | Reverse Transcriptase Polymerase Chain Reaction | Bacteria - genetics | RNA, Bacterial - analysis | Sequence Alignment | Bacterial Proteins - metabolism | Bacterial Proteins - classification | Amino Acid Motifs - genetics | Gene Expression Regulation, Bacterial | Mycobacterium tuberculosis - genetics
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6. Full Text Microbial carboxyl esterases: classification, properties and application in biocatalysis
by Bornscheuer, Uwe T
FEMS Microbiology Reviews, ISSN 0168-6445, 2002, Volume 26, Issue 1, pp. 73 - 81
Esterases (EC 3.1.1.x) represent a diverse group of hydrolases catalyzing the cleavage and formation of ester bonds and are widely distributed in animals,... 
Organic synthesis | Microbial | Biocatalysis | Directed evolution | Carboxyl esterase | ESCHERICHIA-COLI | ACETYL XYLAN ESTERASE | MICROBIOLOGY | microbial | biocatalysis | THERMOSTABLE ESTERASE | carboxyl esterase | organic synthesis | FERULIC ACID | PSEUDOMONAS-PUTIDA MR-2068 | STREPTOMYCES-DIASTATOCHROMOGENES | RECOMBINANT ESTERASE | ALPHA/BETA-HYDROLASE FOLD | NUCLEOTIDE-SEQUENCE | directed evolution | Biotechnology - methods | Carboxylic Ester Hydrolases - classification | Fungi - enzymology | Organic Chemicals - metabolism | Bacteria - enzymology | Carboxylic Ester Hydrolases - genetics | Directed Molecular Evolution | Catalysis | Bacteria - genetics | Fungi - genetics | Carboxylic Ester Hydrolases - metabolism
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7. Full Text Polyphasic classification of the gifted natural product producer Streptomyces roseifaciens sp. nov
by van der Aart, Lizah T and Nouioui, Imen and Kloosterman, Alexander and Igual, José-Mariano and Willemse, Joost and Goodfellow, Michael and van Wezel, Gilles P
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 2019, Volume 69, Issue 4, pp. 899 - 908
A polyphasic study was designed to establish the taxonomic status of a Streptomyces strain isolated from soil from the QinLing Mountains, Shaanxi Province,... 
international | TAXONOMY | MULTILOCUS SEQUENCE-ANALYSIS | MAXIMUM-LIKELIHOOD | PHYLOGENIES | GENE-CLUSTER | ALIGNMENT | Streptomyces | SYSTEMATICS | MICROBIOLOGY | SPORULATION | SSGA-LIKE PROTEINS | Genes, Bacterial | Nucleic Acid Hybridization | Fatty Acids - chemistry | Soil Microbiology | Phospholipids - chemistry | Phylogeny | Multilocus Sequence Typing | Pigmentation | Sequence Analysis, DNA | Streptomyces - isolation & purification | Vitamin K 2 - analogs & derivatives | Vitamin K 2 - chemistry | DNA, Bacterial - genetics | Streptomyces - classification | Base Composition | Bacterial Typing Techniques | China | Biological Products | RNA, Ribosomal, 16S - genetics
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8. Full Text Periplasmic solute-binding proteins: Structure classification and chitooligosaccharide recognition
by Fukamizo, Tamo and Kitaoku, Yoshihito and Suginta, Wipa
International Journal of Biological Macromolecules, ISSN 0141-8130, 05/2019, Volume 128, pp. 985 - 993
Periplasmic solute-binding proteins (SBPs) serve as molecular shuttles that assist the transport of small solutes from the outer membrane to the inner membrane... 
Crystal structures | Periplasmic solute-binding proteins | Chitoligosaccharide, classification | Chitin metabolism | Sugar recognition | Marine bacteria | ABC TRANSPORTER | POLYMER SCIENCE | BACTERIUM VIBRIO-FURNISSII | BIOCHEMISTRY & MOLECULAR BIOLOGY | STREPTOMYCES-THERMOVIOLACEUS OPC-520 | OLIGOSACCHARIDE-BINDING | CRYSTAL-STRUCTURES | CHITIN CATABOLIC CASCADE | FAMILY GH19 CHITINASE | SUBSTRATE-BINDING | CONFORMATIONAL-CHANGES | MOLECULAR-CLONING | CHEMISTRY, APPLIED | Electrochemical reactions | Crystals | Cellulose | Polymerization | Electrochemistry | Bacteria | Chitin | Cholera toxin | Structure | Binding proteins | Protein binding
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9. Full Text Machine Learning Classification Model for Functional Binding Modes of TEM-1 beta-Lactamase
by Wang, F and Shen, L and Zhou, HY and Wang, SY and Wang, XL and Tao, P
FRONTIERS IN MOLECULAR BIOSCIENCES, ISSN 2296-889X, 07/2019, Volume 6, p. 47
TEM family of enzymes is one of the most commonly encountered beta-lactamases groups with different catalytic capabilities against various antibiotics. Despite... 
BACKBONE DYNAMICS | PROTEIN | ACTIVE-SITE | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | GENERAL BASE | machine learning | molecular dynamics | ALLOSTERIC SITE | functional binding modes | structural analysis | random forest classification | PENICILLIN-BINDING | MOLECULAR-DYNAMICS SIMULATIONS | TEM-1 beta-lactamase | STREPTOMYCES-ALBUS-G | Enzymes | Antibiotics | Analysis | Machine learning | Research | TEM-1 β-lactamase
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10. Full Text Examination of Potential Exceptions to the F and S Biosynthetic Classification of Fused‐Ring Aromatic Polyketides
by Thomas, Robert
ChemBioChem, ISSN 1439-4227, 12/2016, Volume 17, Issue 23, pp. 2208 - 2215
The reported acetate‐derived labelling of the fungal naphthalene γ‐pyrone fonsecin, two streptomycete dodecaketide αpyrones TW93f and TW93g, and the... 
natural products | polyketides | aromatic substitution | cyclization | biosynthesis | OXYTETRACYCLINE BIOSYNTHESIS | CHEMISTRY, MEDICINAL | ACID | BIOCHEMISTRY & MOLECULAR BIOLOGY | AFLATOXIN BIOSYNTHESIS | STREPTOMYCES PILOSUS | ALTERNARIOL | IDENTIFICATION | SYNTHASE | PRODUCTS | FUNGAL | FREDERICAMYCIN-A | Polyketides - chemistry | Biosynthetic Pathways | Cyclization | Fungi - metabolism | Polyketides - metabolism
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11. Full Text The RelA/SpoT Homolog (RSH) superfamily: Distribution and functional evolution of ppgpp synthetases and hydrolases across the tree of life
by Atkinson, Gemma C and Tenson, Tanel and Hauryliuk, Vasili
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 8, p. e23479
RelA/SpoT Homologue (RSH) proteins, named for their sequence similarity to the RelA and SpoT enzymes of Escherichia coli, comprise a superfamily of enzymes... 
MYCOBACTERIUM-TUBERCULOSIS | (P)PPGPP SYNTHETASE | STREPTOMYCES-COELICOLOR A3 | COMPARATIVE GENOMICS | STRINGENT RESPONSE | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | HORIZONTAL GENE-TRANSFER | PROTEIN-SYNTHESIS | GUANINE-NUCLEOTIDES | GUANOSINE TETRAPHOSPHATE | Protein Structure, Tertiary | Amino Acid Sequence | Pyrophosphatases - classification | Eukaryota - classification | Ligases - genetics | Pyrophosphatases - genetics | Databases, Genetic | Models, Molecular | Molecular Sequence Data | Pyrophosphatases - chemistry | Ligases - chemistry | Phylogeny | Bacteria - genetics | Sequence Homology, Amino Acid | Sequence Alignment - methods | Ligases - classification | Animals | Eukaryota - genetics | Bacteria - classification | Evolution, Molecular | Enzymes | Ligases | Escherichia coli | Genomics | Physiological aspects | Amino acids | Hydrolases | Trees | Adenosine | Hydrolase | Stringent response | Molecular interactions | Nomenclature | Archaea | Homology | Genomes | Metabolism | Subgroups | Proteins | Synthesis | Consolidation | E coli | Chloroplasts | Classification | Phylogenetics | Bacteria | Stress response | RelA protein
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12. Full Text Streptomyces effect on the bacterial microbiota associated to Crassostrea sikamea oyster
by García Bernal, M and Trabal Fernández, N and Saucedo Lastra, P.E and Medina Marrero, R and Mazón‐Suástegui, J.M
Journal of Applied Microbiology, ISSN 1364-5072, 03/2017, Volume 122, Issue 3, pp. 601 - 614
Aim To determine the composition and diversity of the microbiota associated to Crassostrea sikamea treated during 30 days with Streptomyces strains N7 and RL8.... 
microbiota | Streptomyces | oyster | pyrosequencing | Bacteriovorax | Vibrio | IMMUNITY | PROBIOTICS | MICROBIOLOGY | BACILLUS SPP | ENTEROCOCCUS | RIBOSOMAL-RNA SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | VIBRIO-PARAHAEMOLYTICUS | LARVAE | RESISTANCE | PACIFIC OYSTER | GIGAS | Streptomyces - physiology | Rhodobacteraceae - isolation & purification | Proteobacteria - classification | Gammaproteobacteria - classification | Biodiversity | Vibrio - isolation & purification | Proteobacteria - genetics | Microbiota | Actinobacteria - genetics | Gammaproteobacteria - genetics | Actinobacteria - isolation & purification | Principal Component Analysis | Bacteroidetes - isolation & purification | Rhodobacteraceae - genetics | Streptomyces - genetics | Vibrio - genetics | Actinobacteria - classification | Rhodobacteraceae - classification | Bacteroidetes - classification | Vibrio - classification | Gammaproteobacteria - isolation & purification | Animals | Proteobacteria - isolation & purification | Crassostrea - microbiology | RNA, Ribosomal, 16S - genetics | Bacteroidetes - genetics | Oysters | Microbiota (Symbiotic organisms) | RNA | Crassostrea | Analysis | Biological diversity | Food safety | Food contamination & poisoning | Microbiology | Bacteriology
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