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1. Full Text Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
by Handley, Kim M and Verberkmoes, Nathan C and Steefel, Carl I and Williams, Kenneth H and Sharon, Itai and Miller, Christopher S and Frischkorn, Kyle R and Chourey, Karuna and Thomas, Brian C and Shah, Manesh B and Long, Philip E and Hettich, Robert L and Banfield, Jillian F and Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
ISME Journal, ISSN 1751-7362, 04/2013, Volume 7, Issue 4, pp. 800 - 816
Stimulation of subsurface microorganisms to induce reductive immobilization of metals is a promising approach for bioremediation, yet the overall microbial... 
autotroph; metagenomics; proteomics; sediment; subsurface; syntrophy | proteomics | ESCHERICHIA-COLI | MICROBIOLOGY | subsurface | sediment | ANAEROBIC BIODEGRADATION | NITROGEN-FIXATION | MARINE-SEDIMENT | GENOME SEQUENCE | AUTOTROPHIC DENITRIFICATION | autotroph | metagenomics | ACETATE OXIDATION | ECOLOGY | SP-NOV | DESULFOBACTER-POSTGATEI | syntrophy | SULFATE-REDUCING BACTERIA | Bacteroidetes - isolation & purification | Biodegradation, Environmental | Deltaproteobacteria - metabolism | Fresh Water - microbiology | Oxidation-Reduction | Deltaproteobacteria - classification | Bacteroidetes - classification | Groundwater - microbiology | Carbon | Epsilonproteobacteria - isolation & purification | Nitrogen Cycle | Epsilonproteobacteria - metabolism | Geologic Sediments - microbiology | Bacteroidetes - metabolism | Ecosystem | Epsilonproteobacteria - classification | Proteomics | Sulfur | Deltaproteobacteria - isolation & purification | metagenomics/proteomics/subsurface/sediment/syntrophy/autotroph | Original
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2. Full Text Comment on “Thermodynamically enhancing propionic acid degradation by using sulfate as an external electron acceptor in a thermophilic anaerobic membrane reactor” by Qiao, W., Takayanagi, K., Li, Q., Shofie, M., Gao, F., Dong, R., Li, Y-Y. Water Res. (2016)
by Dolfing, Jan
Water Research, ISSN 0043-1354, 06/2017, Volume 116, pp. 266 - 267
Syntrophy | Propionate | Thermodynamics | Window of opportunity | Methanogenesis
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3. Full Text Development of a bioelectrochemical system as a tool to enrich H2-producing syntrophic bacteria
by Guzman, Juan J.L and Sousa, Diana Z and Angenent, Largus T
Frontiers in Microbiology, ISSN 1664-302X, 2019, Volume 10, Issue FEB
Syntrophic microbial partnerships are found in many environments and play critical roles in wastewater treatment, global nutrient cycles, and gut systems. An... 
Syntrophy | Methanogenic partner | Syntrophus | Syntrophic bacterium | Hydrogen | Bioelectrochemistry | syntrophic bacterium | bioelectrochemistry | hydrogen | methanogenic partner | syntrophy
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4. Full Text Comment on “Biokinetics and bacterial communities of propionate oxidizing bacteria in phased anaerobic sludge digestion systems” by M. Zamanzadeh, W.J. Parker, Y. Verastegui, J.D. Neufeld [Water Res. (2013)]
by Dolfing, Jan
Water Research, ISSN 0043-1354, 01/2014, Volume 48, pp. 643 - 644
Syntrophy | Propionate | Kinetics | Anaerobic digestion | Methanogenesis
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5. Full Text Metabolic dependencies drive species co-occurrence in diverse microbial communities
by Aleksej Zelezniak and Sergej Andrejev and Olga Ponomarova and Daniel R. Mende and Peer Bork and Kiran Raosaheb Patil
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 5/2015, Volume 112, Issue 20, pp. 6449 - 6454
Microbial communities populate most environments on earth and play a critical role in ecology and human health. Their composition is thought to be largely... 
Syntrophy | Metabolic modeling | Naturalization theory | Community metabolism | Cooperation | community metabolism | BACTERIA | MULTIDISCIPLINARY SCIENCES | metabolic modeling | naturalization theory | GUT MICROBIOTA | LATENT CAPACITY | GLOBAL-NETWORK | syntrophy | cooperation | Symbiosis | Microbial Consortia - physiology | Microbial Interactions - physiology | Species Specificity | Models, Biological | Statistics, Nonparametric | Metabolic Networks and Pathways - physiology | Microbial Consortia - genetics | Phylogeny | Cell metabolism | Cell interaction | Microbiological research | Research | Observations | Microbial colonies | Biological Sciences
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6. Full Text Metabolic modeling of a mutualistic microbial community
by Hillesland, Kristina Linnea and Leigh, John A and Pinel, Nicolas and Van Dien, Steve and Lie, Thomas J and Stahl, David A and Stolyar, Sergey
Molecular Systems Biology, ISSN 1744-4292, 03/2007, Volume 3, Issue 1, pp. 1 - n/a
The rate of production of methane in many environments depends upon mutualistic interactions between sulfate‐reducing bacteria and methanogens. To enhance our... 
Methanococcus | flux-balance modeling | Desulfovibrio | interspecies hydrogen transfer | syntrophy | Syntrophy | Interspecies hydrogen transfer | Flux-balance modeling | LACTATE-DEHYDROGENASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | STREPTOCOCCUS-LACTIS | STOICHIOMETRIC MODEL | FORMATE DEHYDROGENASE | METHANOSARCINA-BARKERI | BIOMASS COMPOSITION | ARCHAEON METHANOCOCCUS-MARIPALUDIS | INTERSPECIES HYDROGEN | DESULFOVIBRIO-VULGARIS HILDENBOROUGH | Desulfovibrio vulgaris - metabolism | Models, Theoretical | Sulfates - metabolism | Species Specificity | Coculture Techniques | Methanococcus - growth & development | Methanococcus - metabolism | Desulfovibrio vulgaris - growth & development | Hydrogen - metabolism | Electrons | Cell culture | Phenotypes | Dehydrogenases | Hydrogen | Communities | Carbon dioxide | Metabolic networks | Glycerol | Genomes | Organisms | Biomass | Fluxes | Metabolism | Sulfates | Mutualism | Proteins | Microorganisms | Metabolites | Energy | Methanogenic bacteria | Lactic acid | Sulfate | Community composition
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7. Full Text Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures
by Chen, Shanshan and Rotaru, Amelia-Elena and Liu, Fanghua and Philips, Jo and Woodard, Trevor L and Nevin, Kelly P and Lovley, Derek R
Bioresource Technology, ISSN 0960-8524, 12/2014, Volume 173, pp. 82 - 86
This study investigated the possibility that the electrical conductivity of carbon cloth accelerates direct interspecies electron transfer (DIET) in... 
Syntrophy | Carbon cloth | Methanosarcina | Geobacter | Direct interspecies electron transfer | ENERGY & FUELS | GEOBACTER-SULFURREDUCENS | SOLID-WASTE | PACKED-BED REACTOR | ANAEROBIC-DIGESTION | HYDROGEN | METHANOSAETA | AGRICULTURAL ENGINEERING | MICROBIAL-POPULATION | REDUCTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GROWTH | SP-NOV | Symbiosis | Electron Transport | Oxidation-Reduction | Membranes, Artificial | Cell Communication - physiology | Materials Testing | Electric Conductivity | Coculture Techniques - methods | Microbial Consortia | Carbon - chemistry | Physiological aspects | Electron transport | Electrical conductivity | Electric properties | Diets | Desulfovibrio | Resistivity | Cloth | Electron transfer | Electrically conductive | Metabolism | Carbon
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8. Full Text Fermentative Escherichia coli makes a substantial contribution to H-2 production in coculture with phototrophic Rhodopseudomonas palustris
by Sangani, AA and McCully, AL and LaSarre, B and McKinlay, JB
FEMS MICROBIOLOGY LETTERS, ISSN 0378-1097, 07/2019, Volume 366, Issue 14
Individual species within microbial communities can combine their attributes to produce services that benefit society, such as the transformation of renewable... 
coculture | cross-feeding | COMPLETE GENOME SEQUENCE | formate hydrogenlyase | MECHANISM | biofuel | Rhodopseudomonas palustris | MICROBIOLOGY | hydrogen | syntrophy
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9. Full Text Human Gut Microbiota in Obesity and after Gastric Bypass
by Husen Zhang and John K. DiBaise and Andrea Zuccolo and Dave Kudrna and Michele Braidotti and Yeisoo Yu and Prathap Parameswaran and Michael D. Crowell and Rod Wing and Bruce E. Rittmann and Rosa Krajmalnik-Brown and Charles J. Arntzen
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2009, Volume 106, Issue 7, pp. 2365 - 2370
Recent evidence suggests that the microbial community in the human intestine may play an important role in the pathogenesis of obesity. We examined 184,094... 
Obesity | Microbiota | Archaea | Humans | Gastric bypass | Methanogens | rRNA genes | Weight loss | Bacteria | Bacteroidetes | Syntrophy | Methanogen | Microbial community | Pyrosequencing | Microbiome | microbial community | BACTERIA | SEQUENCES | PECTIN | MULTIDISCIPLINARY SCIENCES | methanogen | pyrosequencing | DIVERSITY | microbiome | syntrophy | 16S RIBOSOMAL-RNA | Body Mass Index | Obesity - surgery | Middle Aged | Gastric Bypass - adverse effects | Molecular Sequence Data | Male | Intestines - metabolism | Obesity - microbiology | Sequence Analysis, DNA | Obesity - pathology | Archaea - metabolism | RNA, Ribosomal, 16S - chemistry | Intestines - microbiology | Models, Biological | Adult | Female | Postoperative Complications | Microbiota (Symbiotic organisms) | Patient outcomes | Development and progression | Health aspects | Risk factors | Biological Sciences
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10. Full Text Microbial metabolic networks at the mucus layer lead to diet-independent butyrate and vitamin B12 production by intestinal symbionts
by Belzer, Clara and Chia, Loo Wee and Aalvink, Steven and Chamlagain, Bhawani and Piironen, Vieno and Knol, Jan and Vos, de, Willem M
mBio, ISSN 2161-2129, 2017, Volume 8, Issue 5, p. e00770-17
Akkermansia muciniphila has evolved to specialize in the degradation and utilization of host mucus, which it may use as the sole source of carbon and nitrogen.... 
Syntrophy | Anaerobes | Cross-feeding | Intestine | Mucus | Akkermansia muciniphila | Butyrate | Microbiome
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11. Full Text Expanding the diet for DIET: Electron donors supporting direct interspecies electron transfer (DIET) in defined co-cultures
by Wang, Li-Ying and Nevin, Kelly P and Woodard, Trevor L and Mu, Bo-Zhong and Lovley, Derek R
Frontiers in Microbiology, ISSN 1664-302X, 03/2016, Volume 7
Direct interspecies electron transfer (DIET) has been recognized as an alternative to interspecies H-2 transfer as a mechanism for syntrophic growth, but... 
Syntrophy | Methanosarcina | Geobacter | Methanogenesis | Methanosaeta | OXIDATION | CARBON | SULFURREDUCENS | MICROBIOLOGY | IRON | methanogenesis | SYNTROPHIC COOPERATION | REDUCTION | ANAEROBIC-BACTERIA | DEGRADATION | GEOBACTER-METALLIREDUCENS | EXCHANGE | syntrophy
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12. Full Text Metabolic flexibility of sulfate-reducing bacteria
by Plugge, C.M and Zhang, Weinwen and Scholten, J.C.M and Stams, A.J.M
Frontiers in Microbiology, ISSN 1664-302X, 2011, Volume 2, Issue MAY, p. 81
Dissimilatory sulfate-reducing prokaryotes (SRB) are a very diverse group of anaerobic bacteria that are omnipresent in nature and play an imperative role in... 
Microbiological Laboratory | Microbiologie | Microbiology | WIMEK | Laboratorium voor Microbiologie | Syntrophy | Sulfate-reducing bacteria | Metabolic flexibility | Metabolic interactions | sulfate-reducing bacteria | MICROBIOLOGY | metabolic flexibility | syntrophy | metabolic interactions | Sulfate reducing bacteria
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13. Full Text Microbial interspecies interactions: Recent findings in syntrophic consortia
by Kouzuma, Atsushi and Kato, Souichiro and Watanabe, Kazuya
Frontiers in Microbiology, ISSN 1664-302X, 2015, Volume 6, Issue MAY
Microbes are ubiquitous in our biosphere, and inevitably live in communities. They excrete a variety of metabolites and support the growth of other microbes in... 
Symbiosis | Signal transduction | Interspecies electron transfer | Methanogenesis | Microbial fuel cell | Mutualism | Communication | GRANULAR SLUDGE | IN-SITU DETECTION | signal transduction | GEOBACTER-SULFURREDUCENS | MICROBIOLOGY | microbial fuel cell | interspecies electron transfer | methanogenesis | MICROORGANISMS | PROPIONATE | symbiosis | ANAEROBIC-BACTERIA | METHANOGENIC CONSORTIA | EXTRACELLULAR ELECTRON-TRANSFER | communication | METHANOCOCCUS-MARIPALUDIS | mutualism | PELOTOMACULUM-THERMOPROPIONICUM | Signal Transduction | microbiome | syntrophy
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14. Full Text Conductive Fe3O4 nanoparticles accelerate syntrophic methane production from butyrate oxidation in two different lake sediments
by Zhang, Jianchao and Lu, Yahai
Frontiers in Microbiology, ISSN 1664-302X, 08/2016, Volume 7, p. 1316
Syntrophic methanogenesis is an essential link in the global carbon cycle and a key bioprocess for the disposal of organic waste and production of biogas.... 
Methane | Syntrophy | Lake sediments | butyrate | Direct interspecies electron transfer | Methanogenesis | BACTERIA | CARBON | PARTICLES | MICROBIOLOGY | ANAEROBIC-DIGESTION | methanogenesis | Fe3O4 | ELECTROMETHANOGENESIS | direct interspecies electron transfer | lake sediments | METABOLISM | REDUCTION | CONSORTIA | INTERSPECIES ELECTRON-TRANSFER | methane | DYNAMICS | syntrophy | Analysis | Environmental aspects | Models | Research | Butyrate
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15. Full Text DNA stable-isotope probing of oil sands tailings pond enrichment cultures reveals different key players for toluene degradation under methanogenic and sulidogenic conditions
by Laban, Nidal Abu and Dao, Anh and Foght, Julia
FEMS Microbiology Ecology, ISSN 0168-6496, 2015, Volume 91, Issue 5
Sulfate reduction | Syntrophy | Benzylsuccinate synthase | Methanogenesis | Anaerobic toluene degradation | Fumarate addition | Tailings
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16. Full Text Trojan Horses and Black Queens: ‘causal core’ explanations in microbiome research
by Skillings, Derek
Biology & Philosophy, ISSN 0169-3867, 12/2019, Volume 34, Issue 6, pp. 1 - 6
Lynch et al., in an article in this issue, argue that an entire microbiome is rarely, if ever, the right target of analysis for causal explanations in... 
Philosophy of Biology | Syntrophy | Interventionist causation | Proportionality | Disease | Health | Evolutionary Biology | Philosophy | Microbiome | Spyware | Analysis
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17. Full Text Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
by Pande, Samay and Merker, Holger and Bohl, Katrin and Reichelt, Michael and Schuster, Stefan and De Figueiredo, Luís F and Kaleta, Christoph and Kost, Christian
ISME Journal, ISSN 1751-7362, 2014, Volume 8, Issue 5, pp. 953 - 962
Cross-feeding interactions, in which bacterial cells exchange costly metabolites to the benefit of both interacting partners, are very common in the microbial... 
metabolic cross-feeding | synthetic ecology | division of labour | frequency-dependent selection | syntrophy | obligate cooperation | ESCHERICHIA-COLI | MICROBIOLOGY | MECHANISMS | COOPERATION | COEXISTENCE | EVOLUTION | METHANE | COMPETITION | ADAPTATION | ECOLOGY | DIVERGENCE | MUTUALISTS | Bacteria - growth & development | Bacteria - metabolism | Genetic Fitness | Escherichia coli - genetics | Escherichia coli - metabolism | Ecology | Escherichia coli - growth & development | Bacteria - genetics | Microbial Interactions | Original
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