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Biochemical Journal, ISSN 0264-6021, 09/2010, Volume 430, Issue 3, pp. 393 - 404
LRRK2 (leucine-rich repeat protein kinase 2) is mutated in a significant number of Parkinson's disease patients, but still little is understood about how it is... 
Pathogenic mutation | 14-3-3 protein | Phosphorylation | Cytoplasmic localization | Parkinson's disease | Leucine-rich repeat protein kinase 2 (LRRK2) | KINASE-ACTIVITY | leucine-rich repeat protein kinase 2 (LRRK2) | cytoplasmic localization | pathogenic mutation | BIOCHEMISTRY & MOLECULAR BIOLOGY | DEPHOSPHORYLATION | PROTEINS | phosphorylation | 14-3-3-PROTEINS | Immunoprecipitation | Humans | Swiss 3T3 Cells | Molecular Sequence Data | Cytoplasm - metabolism | Green Fluorescent Proteins - genetics | Brain - metabolism | Kidney - metabolism | Protein-Serine-Threonine Kinases - metabolism | 14-3-3 Proteins - genetics | Amino Acid Sequence | Cell Line | Green Fluorescent Proteins - metabolism | Protein-Serine-Threonine Kinases - genetics | Serine - genetics | Binding Sites - genetics | Parkinson Disease - genetics | Serine - metabolism | Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 | Mice, Knockout | 14-3-3 Proteins - metabolism | Sequence Homology, Amino Acid | Animals | Spleen - metabolism | Protein Binding | Mice | Mutation | Microscopy, Fluorescence | Index Medicus | DIG, digoxigenin | GFP, green fluorescent protein | COR, C-terminal of ROC | FBS, fetal bovine serum | SILAC, stable isotope labelling of amino acids | TBST, Tris-buffered saline with Tween 20 | DTT, dithiothreitol | HEK-293, human embryonic kidney | Hsp90, heat-shock protein 90 | PD, Parkinson's disease | DMEM, Dulbecco's modified Eagle's medium | IPI, International Protein Index | MARK3, microtubule affinity-regulating kinase 3 | CDC, cell division cycle | LRRK2, leucine-rich repeat protein kinase 2 | ROC, Ras of complex GTPase domain | KLH, keyhole-limpet haemocyanin
Journal Article
Biochemical Journal, ISSN 0264-6021, 07/2006, Volume 397, Issue 1, pp. 223 - 231
The SPAK (STE20/SPS1-related proline/alanine-rich kinase) and OSR1 (oxidative stress-responsive kinase-1) kinases interact and phosphorylate NKCC1... 
Hypertension | STE20/SPS1-related proline/alanine-rich kinase (SPAK) | Pseudohypoaldosteronism type II | Cation co-transporter | Gordon's syndrome | Protein kinase | K-CL COTRANSPORTER | SPAK | PHOSPHORYLATION | OSR1 | BIOCHEMISTRY & MOLECULAR BIOLOGY | NA+-K+-2CL(-) COTRANSPORTER | protein kinase | PROTEIN-KINASES | BLOOD-PRESSURE | ALANINE-RICH KINASE | TERMINUS | pseudohypoaldosteronism type II | cation co-transporter | hypertension | Phosphorylation | Threonine | Minor Histocompatibility Antigens | Humans | Serine | Cells, Cultured | Sodium-Potassium-Chloride Symporters | Intracellular Signaling Peptides and Proteins | Substrate Specificity | Kidney - cytology | Sequence Homology, Amino Acid | Transcription Factors - metabolism | Hyperkalemia - genetics | Osmolar Concentration | Solute Carrier Family 12, Member 2 | WNK Lysine-Deficient Protein Kinase 1 | Enzyme Activation | Hypertension - genetics | Mutation | Binding Sites | Protein-Serine-Threonine Kinases - metabolism | Index Medicus | WNK, with no K (lysine) protein kinase | LDS, lithium dodecyl sulphate | MALDI–TOF | TBST, Tris-buffered saline with Tween 20 | TOF, matrix-assisted laser-desorption ionization–tandem time-of-flight | DTT, dithiothreitol | HEK-293, human embryonic kidney | PDK1, phosphoinositide-dependent kinase 1 | CCT domain, conserved C-terminal domain | NCC, Na+–Cl− co-transporter | SA, streptavidin-coated | KCC, K+–Cl− co-transporter | GST, glutathione S-transferase | NKCC, Na+–K+–2Cl− co-transporter | GSK3, glycogen synthase kinase 3 | alanine-rich kinase (SPAK) | SPAK, STE20 | CATCHtide, cation chloride co-transporter peptide substrate | OSR1, oxidative stress-responsive kinase-1 | SPS1-related proline | STE20 | MAPK, mitogen-activated protein kinase | alanine-rich kinase
Journal Article
Biochemical Journal, ISSN 0264-6021, 03/2007, Volume 402, Issue 2, pp. 219 - 227
Reactive oxygen species are involved in the aging process and diseases. Despite the important role of Cu/Zn SOD (superoxide dismutase) encoded by SOD],... 
Autoantibody | Oxidative stress | Anaemia | Carbonic anhydrase | SOD1 deficiency | anaemia | autoantibody | PROTEIN OXIDATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | COPPER/ZINC SUPEROXIDE-DISMUTASE | GLUTATHIONE-PEROXIDASE | AMYOTROPHIC-LATERAL-SCLEROSIS | INDUCTION | SOD 1 deficiency | HEMOLYTIC-ANEMIA | TUMOR NECROSIS FACTOR | ANTIOXIDANT | carbonic anhydrase | MICE | EXPRESSION | oxidative stress | Erythrocytes - immunology | Inflammation - pathology | Superoxide Dismutase - genetics | Anemia - immunology | Oxidation-Reduction | Anemia - pathology | Superoxide Dismutase - deficiency | Antioxidants - pharmacology | Autoantibodies - biosynthesis | Mice, Knockout | Anemia - genetics | Autoantibodies - immunology | Inflammation - metabolism | Phenotype | Animals | Inflammation - drug therapy | Acetylcysteine - pharmacology | Anemia - enzymology | Mice | Erythrocytes - enzymology | Oxidative Stress - drug effects | Superoxide Dismutase-1 | Superoxide Dismutase - metabolism | Index Medicus | RBC, red blood cell | DCFH-DA, 2′,7′-dichlorofluorescin diacetate | TBST, Tris-buffered saline with Tween 20 | NAC, N-acetylcysteine | TBS, Tris-buffered saline | TRX, thioredoxin | CAII, carbonic anhydrase II | TBARS, thiobarbituric acid-reactive substances | ALS, amyotrophic lateral sclerosis | SOD, superoxide dismutase | HRP, horseradish peroxidase | GPX, glutathione peroxidase | CAT, catalase | GR, glutathione reductase | NHS-LC-biotin, N-succinimidyl-6-(biotinamide)hexanoate | Prx, peroxiredoxin | ROS, reactive oxygen species | DHR123, dihydrorhodamine123 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase
Journal Article
Journal Article
Biochemical Journal, ISSN 0264-6021, 09/2012, Volume 446, Issue 3, pp. 373 - 381
In the present paper, we report that mitosis is a key step in the cellular response to genotoxic agents in human cells. Cells with damaged DNA recruit gamma... 
Cyclin-dependent kinase 1 (Cdk1) | Mitotic catastrophe | Camptothecin | Checkpoint adaptation | Checkpoint kinase 1 (Chk1) | Mitosis | cyclin-dependent kinase 1 (Cdk1) | APOPTOSIS | checkpoint kinase 1 (Chk1) | TOPOISOMERASE-II | PHOSPHORYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | mitosis | POLO-LIKE KINASE | MAMMALIAN-CELLS | CYCLIN-DEPENDENT KINASES | CHECKPOINT KINASE-1 | camptothecin | mitotic catastrophe | CANCER DEVELOPMENT | CHK1 | S-PHASE | checkpoint adaptation | Protein Kinases - metabolism | Proto-Oncogene Proteins - metabolism | Phosphorylation | Humans | Cell Cycle Proteins - metabolism | Mutagens - pharmacology | DNA - metabolism | CDC2 Protein Kinase - metabolism | HT29 Cells | Cell Cycle | DNA Damage - physiology | Mutagens - adverse effects | Checkpoint Kinase 1 | Genome | Protein-Serine-Threonine Kinases - metabolism | Index Medicus | Adaptations | polo-like kinase 1 | Histone H2A | CHK1 protein | DNA damage | Genotoxicity | Dephosphorylation | Cyclin-dependent kinase | Cyclin-dependent kinase 1 | Molecular modelling | Cell cycle | genomics | Plk1, Polo-like kinase 1 | Cdk, cyclin-dependent kinase | TBST, Tris-buffered saline with Tween 20 | Chk1, checkpoint kinase 1 | DAPI, 4′,6-diamidino-2-phenylindole | PP1a, protein phosphatase 1α | TDC, total and DNA-damaged cell | IDC, interphasic and DNA-damaged cell | MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide | γH2AX, phosphorylated histone H2AX | MDC, mitotic and DNA-damaged cell | GST, glutathione transferase | CPT, camptothecin
Journal Article
Journal of Thoracic and Cardiovascular Surgery, The, ISSN 0022-5223, 2014, Volume 148, Issue 5, pp. 2335 - 2344
Objectives Lung deflation and inflation during cardiac surgery with cardiopulmonary bypass contributes to pulmonary dysfunction postoperatively. Theophylline... 
Cardiothoracic Surgery | PULMONARY | SURGERY | CARDIAC & CARDIOVASCULAR SYSTEMS | PERMEABILITY | MECHANISM | PHOSPHORYLATION | VENTILATION | PATHWAY | RESPIRATORY SYSTEM | CARDIAC-SURGERY | ENDOTHELIAL-CELLS | INHIBITORS | BRONCHODILATORS | Lung Injury - pathology | Phosphorylation | Rats, Wistar | Cardiopulmonary Bypass - adverse effects | Male | Lung Injury - etiology | Lung - enzymology | Lung Injury - enzymology | Time Factors | Lung Injury - prevention & control | p38 Mitogen-Activated Protein Kinases - metabolism | Proto-Oncogene Proteins c-akt - metabolism | Cytoprotection | Lung - pathology | Lung Compliance | Phosphodiesterase Inhibitors - pharmacology | Lung - physiopathology | Perfusion - methods | Lung Injury - physiopathology | Animals | Mitogen-Activated Protein Kinase 3 - metabolism | Mitogen-Activated Protein Kinases - antagonists & inhibitors | Signal Transduction - drug effects | Lung - drug effects | Theophylline - pharmacology | Protein Kinase Inhibitors - pharmacology | Enzyme Activation | In Vitro Techniques | Proto-Oncogene Proteins c-akt - antagonists & inhibitors | Mitogen-Activated Protein Kinase 1 - metabolism | Mitogen-Activated Protein Kinases - metabolism | Coronary artery bypass | Mitogens | Theophylline | Index Medicus | Abridged Index Medicus | SBB, sanguineous BB | cAMP, cyclic adenosine monophosphate | 2, extracellular signal-regulated kinase 1 and 2 | PDE, phosphodiesterase | ERK1 | CPB, cardiopulmonary bypass | PI3K, phosphoinositide 3-kinase | BB, bicarbonate buffer | Basic Science | TBST, Tris-buffered saline with Tween 20 | Evolving Technology | MAPK, mitogen-activated protein kinase
Journal Article
Data in Brief, ISSN 2352-3409, 06/2016, Volume 7, Issue C, pp. 641 - 647
We characterized the dynamics of autophagy using four different cell systems and analyzing markers widely used in this field, i.e. LC3 (microtubule-associated... 
Autophagy | LC3 | p62 | Western-blot | Life Sciences | Cellular Biology | Biochemistry, Molecular Biology
Journal Article
FEBS Letters, ISSN 0014-5793, 2005, Volume 579, Issue 30, pp. 6796 - 6802
The ankyrin repeat and SOCS box (ASB) family is composed of 18 proteins from ASB1 to ASB18 and belongs to the suppressor of cytokine signaling (SOCS) box... 
ASB | SOCS box | Cul5 | Ubiquitin ligase | Rbx2 | Ankyrin repeat | (−)-thiogalactopyranoside | APS | DTT | glutathione | adaptor protein containing PH and SH2 domains | HRP | phosphate-buffered saline | Skp1/Cullin/F-box protein complex | ankyrin repeat and SOCS box | Cullin | ethylenediaminetetraacetic acid | horseradish peroxidase | Cul | pVHL | PBS | suppressor of cytokine signaling | polyvinylidene difluoride | dithiothreitol | TBST | GST | SOCS | Tris-buffered saline with Tween 20 | EDTA | transferase | SDS–PAGE | PVDF | sodium dodecyl sulfate–polyacrylamide-gel electrophoresis | isopropyl-β | ubiquitin | SCF | von Hippel–Lindau disease protein | IPTG | ubiquitin ligase | CELLS | SOCS-BOX | PHOSPHORYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | MEDIATED DEGRADATION | RECONSTITUTE | CELL BIOLOGY | DESTRUCTION | BIOPHYSICS | PATHWAY | ankyrin repeat | ASSEMBLE | TUMOR-SUPPRESSOR PROTEIN | COMPONENT | Humans | Molecular Sequence Data | Transfection | DNA Mutational Analysis | Cullin Proteins - metabolism | Suppressor of Cytokine Signaling Proteins - chemistry | Repressor Proteins - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Cell Line | Ligases - metabolism | Recombinant Proteins - chemistry | Repressor Proteins - genetics | Suppressor of Cytokine Signaling Proteins - genetics | Ankyrin Repeat | Ubiquitin-Protein Ligases - biosynthesis | Blotting, Western | Precipitin Tests | Cullin Proteins - genetics | Sequence Homology, Amino Acid | Carrier Proteins - genetics | Carrier Proteins - metabolism | Escherichia coli - genetics | Mutation | Suppressor of Cytokine Signaling Proteins - metabolism | Ubiquitin-Protein Ligases - genetics | Ubiquitin | Polyvinylidene fluoride | Ligases | Analysis | Protein binding | Index Medicus
Journal Article
EBioMedicine, ISSN 2352-3964, 03/2019, Volume 41, pp. 185 - 199
DNA damage repair (DDR) alterations are important events in cancer initiation, progression, and therapeutic resistance. However, the involvement of DDR... 
DNA damage repair | Glioma microenvironment | Midkine | Microglia | p53 | MEDICINE, RESEARCH & EXPERIMENTAL | TERT PROMOTER | CELL-LINES | CANCER | TEMOZOLOMIDE | TARGETS | HOMOLOGOUS RECOMBINATION | GROWTH-FACTOR | MUTATIONS | REVEALS
Journal Article
Bioscience Reports, ISSN 0144-8463, 12/2012, Volume 32, Issue 6, pp. 521 - 530
Nitration of tryptophan residues is a novel post-translational modification. In the present study, we examined whether NO(2)Trp (nitrotryptophan)-containing... 
Cerebellum | Proteome | Tryptophan residue | 6-nitrotryptophan | Tandem MS analysis | Hippocampus | hippocampus | PEROXYNITRITE | tryptophan residue | ALZHEIMERS-DISEASE | SINGLE TRYPTOPHAN RESIDUE | HUMAN CU,ZN-SUPEROXIDE DISMUTASE | cerebellum | proteome | CELL BIOLOGY | tandem MS analysis | NITRIC-OXIDE | NITROTYROSINE | PC12 CELLS | TYROSINE NITRATION | HEART-MITOCHONDRIA | BRAIN | Amino Acid Sequence | Hippocampus - chemistry | Cerebellum - metabolism | Rats, Inbred F344 | Molecular Sequence Data | Rats | Male | Tryptophan - metabolism | Nitric Oxide Synthase Type III - chemistry | Hippocampus - metabolism | Tandem Mass Spectrometry | Animals | Proteins - metabolism | Tryptophan - analogs & derivatives | Nitric Oxide Synthase Type I - metabolism | Proteomics | Cerebellum - chemistry | Protein Processing, Post-Translational | Nitric Oxide Synthase Type III - metabolism | Proteins - chemistry | Nitric Oxide Synthase Type I - chemistry | Tryptophan - analysis | Index Medicus | Enzymes | Nitration | proteomics | Antibodies | Tryptophan | Nitric-oxide synthase | Western blotting | Trypsin | Glycolysis | Post-translation | Cytoskeleton | LC-ESI-MS | eNOS, endothelial nitric oxide synthase | Original Paper | NO2Trp, nitrotyptophan | ALP, alkaline phosphatase | MS, LC-electrospray ionization-tandem MS | TBST, Tris-buffered saline with Tween 20 | IEF, isoelectric focusing | IP, immunoprecipitation | DTT, dithiothreitol | AD, Alzheimer's disease | IPG, immobilized pH gradient | PDCE2, dihydrolipoly(lysine) residue acetyltransferase component of pyruvate dehydrogenase complex | iNOS, inducible nitric oxide synthase | nNOS, neuronal nitric oxide synthase | RNS, reactive nitrogen species | SCOT, succinyl-CoA 3-ketoacid coenzyme A transferase
Journal Article
Biochemical Journal, ISSN 0264-6021, 05/2005, Volume 388, Issue 1, pp. 17 - 28
IFN gamma (interferon-gamma) binding to its cognate receptor results, through JAK (Janus kinase), in direct activation of receptor-bound STAT1 (signal... 
Interferon-γ (IFNγ) | Annexin II | Mitogen-activated protein kinase/extracellular-signal-regulated kinase kinase kinase 4 (MEKK4) | Pyk2 | Src-homology-2-domain-containing phosphatase (SHP2) | CARCINOMA-CELLS | mitogen-activated protein kinase/extracellular-signal-regulated kinase kinase kinas 4 (MEKK4) | IFN-GAMMA | PROTEIN-KINASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TERMINAL KINASE | CALCIUM INFLUX | SH2 DOMAIN | GROWTH-FACTOR RECEPTOR | interferon-gamma (IFN gamma) | TARGETED DISRUPTION | SIGNALING PATHWAY | annexin II | STAT1 (signal transducer and activator of transcription 1) | PHOSPHOTYROSINE PHOSPHATASE | Protein Tyrosine Phosphatase, Non-Receptor Type 11 - metabolism | Tyrosine | Cell Line | Phosphorylation | Annexin A2 - physiology | MAP Kinase Kinase 6 - physiology | Signal Transduction | Humans | Interferon-gamma - physiology | MAP Kinase Kinase Kinase 4 - chemistry | MAP Kinase Kinase Kinase 4 - physiology | Protein Tyrosine Phosphatase, Non-Receptor Type 11 - chemistry | Interferon-gamma - chemistry | Annexin A2 - chemistry | Animals | Calcium Signaling | Keratinocytes - physiology | Index Medicus | ATF2, activating transcription factor 2 | CSK, C-terminal Src kinase | TBST, Tris-buffered saline with Tween 20 | DMEM, Dulbecco's minimal essential medium | MEKK, MAPK | NP40, Nonidet P40 | extracellular-signal-regulated protein kinase kinase kinase | DTT, dithiothreitol | mitogen-activated protein kinase | STAT1, signal transducer and activator of transcription 1 | IFNγ, interferon-γ | BAPTA | SHP2, SH2-domain-containing tyrosine phosphatase | AM, bis-(o-aminophenoxy)ethane-N,N,N′,N′-tetra-acetic acid tetrakis(acetoxymethyl ester) | GST, glutathione S-transferase | COX2, cyclo-oxygenase 2 | HA, haemagglutinin | JAK, Janus kinase | IFNGR, IFNγ receptor | SH2, Src homology 2 | FBS, foetal bovine serum | extracellular-signal-regulated kinase kinase kinase 4 (MEKK4) | interferon-γ (IFNγ) | MKK6, MAPK kinase 6 | MAPK, mitogen-activated protein kinase
Journal Article
Journal Article
Journal Article
Biochemical Journal, ISSN 0264-6021, 05/2005, Volume 388, Issue 1, pp. 185 - 194
The regulation of survival and cell death is a key determinant of cell fate. Recent evidence shows that survival and death machineries are regulated along the... 
Signal transduction | Bim (Bcl-2-interacting mediator of cell death) | Fibroblast growth factor (FGF) | Mitosis | Cell cycle | Apoptosis | BCL-2 RELATIVE BIM | SURVIVAL | PROAPOPTOTIC ACTIVITY | cell cycle | signal transduction | INDUCED APOPTOSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | apoptosis | DEATH | mitosis | FAMILY-MEMBER BIM | MICROTUBULE DYNAMICS | PATHWAY | fibroblast growth factor (FGF) | CELL-CYCLE | BH3-ONLY PROTEINS | Proto-Oncogene Proteins - metabolism | NIH 3T3 Cells | Phosphorylation | Signal Transduction | MAP Kinase Kinase Kinases - metabolism | Extracellular Signal-Regulated MAP Kinases - metabolism | Apoptosis Regulatory Proteins - metabolism | CDC2 Protein Kinase - metabolism | Animals | Bcl-2-Like Protein 11 | Mitosis - physiology | Membrane Proteins - metabolism | Mice | Protein Processing, Post-Translational | Apoptosis - physiology | Fibroblast Growth Factors - physiology | Index Medicus | TUNEL, terminal deoxynucleotidyl transferase-mediated dUTP nick-end labelling | PI3K, phosphoinositide 3-kinase | CIP, calf intestine phosphatase | HEK, human embryonic kidney | TBST, Tris-buffered saline with Tween 20 | BH, Bcl-2 homology | ERK kinase | DTT, dithiothreitol | ERK, extracellular-signal-regulated kinase | DMEM, Dulbecco's modified Eagle's medium | P-Bim, phosphorylated Bim | Bim, Bcl-2-interacting mediator of cell death | BimEL, extra-long Bim | Cdk, cyclin-dependent kinase | FGF, fibroblast growth factor | MEK, mitogen-activated protein kinase | HA, haemagglutinin | IP, immunoprecipitation | BimS, short Bim | MT, microtubule | bFGF, basic fibroblast growth factor | BimL, long BIM | FBS, foetal bovine serum
Journal Article