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1. Full Text Light sheet microscopy
by Weber, Michael and Mickoleit, Michaela and Huisken, Jan
2014, ISBN 9780124201385, Volume 123
This chapter introduces the concept of light sheet microscopy along with practical advice on how to design and build such an instrument. Selective plane... 
Mounting | Light sheet microscopy | Image processing | Developmental biology | Zebrafish | Ultramicroscopy | Fluorescence microscopy | Three-dimensional imaging | Selective plane illumination microscopy | Animals | Microscopy, Fluorescence - methods | Image Enhancement | Humans | Imaging, Three-Dimensional - methods | Time-Lapse Imaging - methods | Microscopy, Confocal - methods
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2. Full Text Quantification of CD4+ T Cell Alloreactivity and Its Control by Regulatory T Cells Using Time‐Lapse Microscopy and Immune Synapse Detection
by Juvet, S. C and Sanderson, S and Hester, J and Wood, K. J and Bushell, A
American Journal of Transplantation, ISSN 1600-6135, 05/2016, Volume 16, Issue 5, pp. 1394 - 1407
Assays designed to select transplant recipients for immunosuppression withdrawal have met with limited success, perhaps because they measure events downstream... 
SURGERY | DENDRITIC CELLS | REJECTION | RENAL-TRANSPLANT TOLERANCE | IN-VIVO | FREQUENCY | ALLOGRAFT SURVIVAL | INDUCTION | ANTI-CD4 MONOCLONAL-ANTIBODY | IMMUNOLOGICAL SYNAPSE | ANTIGEN RECEPTOR | TRANSPLANTATION | Graft Survival - immunology | Dendritic Cells - immunology | Mice, Inbred C57BL | Heart Transplantation - adverse effects | Graft Rejection - etiology | Graft Rejection - diagnosis | T-Lymphocytes, Regulatory - immunology | CD4-Positive T-Lymphocytes - immunology | Animals | Immune Tolerance - immunology | Isoantigens - immunology | Immunological Synapses - immunology | Mice, Inbred CBA | Time-Lapse Imaging - methods | Mice | Dendritic cells | T cells | Muscle proteins | Immunotherapy | Microscope and microscopy | Fluorescein | Flow cytometry | Microscopy | Lymphocytes | Rodents | Original
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3. Full Text Nanoscale Dynamics of Amyloid β‑42 Oligomers As Revealed by High-Speed Atomic Force Microscopy
by Banerjee, Siddhartha and Sun, Zhiqiang and Hayden, Eric Y and Teplow, David B and Lyubchenko, Yuri L
ACS Nano, ISSN 1936-0851, 12/2017, Volume 11, Issue 12, pp. 12202 - 12209
Amyloid β-protein (Aβ) oligomers are emerging as potent neurotoxic species in Alzheimer’s disease pathogenesis. Detailed characterization of oligomer structure... 
AFM time lapse | single-molecule dynamics | amyloid β-protein | amyloid oligomers | atomic force microscopy | Alzheimer's disease | ALZHEIMERS-DISEASE | MATERIALS SCIENCE, MULTIDISCIPLINARY | CROSS-LINKING | CHEMISTRY, PHYSICAL | NANOSCIENCE & NANOTECHNOLOGY | ALPHA-SYNUCLEIN | amyloid beta-protein | CHEMISTRY, MULTIDISCIPLINARY | PROTEIN OLIGOMERS | A-BETA(1-42) | FIBRILS | CHEMISTRY | DEFICITS | AGGREGATION | INSIGHTS | Index Medicus | Amyloid beta-protein | single molecule dynamics
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4. Full Text Correlative Microscopy
by Mironov, Alexander A and Beznoussenko, Galina V
2013, Methods in Cell Biology, ISBN 9780124072398, Volume 113, 47
Correlative microscopy is a method when for the analysis of the very same cell or tissue area several different methods of light or electron microscopy are... 
Intracellular transport | Membrane fusion | Culture cells | Electron tomography | Correlative light-electron microscopy | ER–mitochondrial contact sites | Membrane fission | Dual beam scanning electron microscopy | Electron microscopy | Nuclear transport | Signaling | 3D image | Role of membrane coat | Formation of coat-dependent vesicles | Correlative light–light microscopy | Intracellular localization | Focused ion beam scanning electron microscopy | Time-lapse analysis | Mitochondrial contacts | Impairment of intracellular transport and endocytosis | Correlative light-light microscopy | ER-mitochondrial contact sites | FLUORESCENCE | MEMBRANE | ULTRASTRUCTURE | TISSUE | LIGHT | NEURONS | ELECTRON-MICROSCOPY | CRYOSECTIONS | TOOL | CELL BIOLOGY | Immunohistochemistry | Microscopy, Electron - methods | Microscopy, Fluorescence - methods | Green Fluorescent Proteins - biosynthesis | Single-Cell Analysis - methods | Humans | Microscopy, Video | Plastic Embedding | HeLa Cells | Buffers | Immunoenzyme Techniques | Microtomy
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5. Full Text Circumventing Photodamage in Live-Cell Microscopy
by Magidson, Valentin and Khodjakov, Alexey
2013, Methods in Cell Biology, ISBN 0124077617, Volume 114, 16
Fluorescence microscopy has become an essential tool in cell biology. This technique allows researchers to visualize the dynamics of tissue, cells, individual... 
GFP | Fluorescence | Phototoxicity | Photodamage | Live-cell microscopy | MITOSIS | STRESS-ACTIVATED CHECKPOINT | IN-VIVO | NANOSCOPY | DYNAMICS | PLANE ILLUMINATION | CYCLE PROGRESSION | FLUORESCENT PROTEINS | MICROSCOPY | LIVING CELLS | CELL BIOLOGY | Artifacts | Green Fluorescent Proteins - metabolism | Animals | Microscopy, Fluorescence - methods | Single-Cell Analysis - methods | Humans | Light | Cells, Cultured | Time-Lapse Imaging - methods | HeLa Cells | phototoxicity | photodamage | fluorescence | live-cell microscopy
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6. Full Text Light sheet microscopy with acoustic sample confinement
by Yang, Zhengyi and Cole, Katy L. H and Qiu, Yongqiang and Somorjai, Ildikó M. L and Wijesinghe, Philip and Nylk, Jonathan and Cochran, Sandy and Spalding, Gabriel C and Lyons, David A and Dholakia, Kishan
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 669 - 8
Contactless sample confinement would enable a whole host of new studies in developmental biology and neuroscience, in particular, when combined with long-term,... 
AMPHIOXUS | CELLS | MANIPULATION | MULTIDISCIPLINARY SCIENCES | EMBRYOS | TISSUE | Animals | Embryo, Nonmammalian - diagnostic imaging | Larva | Time-Lapse Imaging - methods | Zebrafish | Acoustics | Developmental Biology | Microscopy, Fluorescence | Dynamic response | Cardiovascular system | Heart | Larvae | Confinement | Developmental biology | Contractility | Immobilization | Nervous system | Real time | Embryos | Muscle contraction | Biomechanics | Microscopy | Acoustic microscopy | Optical flow (image analysis) | Verapamil | Norepinephrine | Marine animals | Index Medicus
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7. Full Text Super Resolution Fluorescence Microscopy and Tracking of Bacterial Flotillin (Reggie) Paralogs Provide Evidence for Defined-Sized Protein Microdomains within the Bacterial Membrane but Absence of Clusters Containing Detergent-Resistant Proteins
by Dempwolff, Felix and Schmidt, Felix K and Hervás, Ana B and Stroh, Alex and Rösch, Thomas C and Riese, Cornelius N and Dersch, Simon and Heimerl, Thomas and Lucena, Daniella and Hülsbusch, Nikola and Stuermer, Claudia A. O and Takeshita, Norio and Fischer, Reinhard and Eckhardt, Bruno and Graumann, Peter L
PLoS Genetics, ISSN 1553-7390, 06/2016, Volume 12, Issue 6, p. e1006116
Biological membranes have been proposed to contain microdomains of a specific lipid composition, in which distinct groups of proteins are clustered.... 
STOMATIN | CELL-DIVISION | DOMAIN | INTERPLAY | INTERACT | CYTOSKELETON | BACILLUS-SUBTILIS | REGENERATION | GROWTH | GENETICS & HEREDITY | REGGIE/FLOTILLIN | Physiological aspects | Lipid membranes | Bacterial proteins | Fluorescence microscopy | Methods | Proteins | Signal transduction | Microscopy | Lipids | Localization | Experiments | Molecular weight
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8. Full Text Superresolution Imaging of Biological Systems Using Photoactivated Localization Microscopy
by Sengupta, Prabuddha and van Engelenburg, Schuyler B and Lippincott-Schwartz, Jennifer
Chemical Reviews, ISSN 0009-2665, 03/2014, Volume 114, Issue 6, pp. 3189 - 3202
HETEROGENEITY | MARKER PROTEIN | SINGLE-MOLECULE LOCALIZATION | 3-DIMENSIONAL SUPERRESOLUTION | PALM | RESOLUTION LIMIT | FLUORESCENT PROTEIN | SPATIAL-ORGANIZATION | QUANTITATIVE-ANALYSIS | CHEMISTRY, MULTIDISCIPLINARY | HIGH-DENSITY LOCALIZATION | Image Processing, Computer-Assisted | Microscopy | Luminescent Proteins - chemistry | Mitochondria - metabolism | Time-Lapse Imaging | Nanotechnology | Luminescent Proteins - metabolism | Biomolecules | Usage | Diagnostic imaging | Photomicrography | Analysis | Methods
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9. Full Text The ePetri dish, an on-chip cell imaging platform based on subpixel perspective sweeping microscopy (SPSM)
by Guoan Zheng and Seung Ah Lee and Yaron Antebi and Michael B. Elowitz and Changhuei Yang
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2011, Volume 108, Issue 41, pp. 16889 - 16894
We report a chip-scale lensless wide-field-of-view microscopy imaging technique, subpixel perspective sweeping microscopy, which can render microscopy images... 
Cell culture techniques | Microscopy | Imaging | Stem cells | Cell lines | HeLa cells | Sensors | Pluripotent stem cells | Image reconstruction | Pixels | Stem cell differentiation tracking | On-chip cellular imaging | Superresolution algorithm | Time-lapse microscopy | Lensless imaging | IN-LINE HOLOGRAPHY | STEM-CELLS | stem cell differentiation tracking | ILLUMINATION | RECONSTRUCTION | MULTIDISCIPLINARY SCIENCES | RESOLUTION | lensless imaging | ELIMINATION | OF-VIEW MICROSCOPE | on-chip cellular imaging | CAENORHABDITIS-ELEGANS | time-lapse microscopy | FOURIER-TRANSFORM | superresolution algorithm | CONSTRAINTS | Image Processing, Computer-Assisted - statistics & numerical data | Algorithms | Animals | Embryonic Stem Cells - cytology | Time-Lapse Imaging - instrumentation | Cell Culture Techniques - instrumentation | Microscopy - instrumentation | Cell Division | Humans | Mice | HeLa Cells | Usage | Research | Microscope and microscopy | Cells | Imaging systems | Physical Sciences
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10. Full Text Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid
by Mathew Stracy and Christian Lesterlin and Federico Garza de Leon and Stephan Uphoff and Pawel Zawadzki and Achillefs N. Kapanidis
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2015, Volume 112, Issue 32, pp. E4390 - E4399
Despite the fundamental importance of transcription, a comprehensive analysis of RNA polymerase (RNAP) behavior and its role in the nucleoid organization in... 
Protein-DNA interactions | Transcription | Superresolution | RNA Polymerase | Single-molecule tracking | single-molecule tracking | PROTEIN | transcription | protein-DNA interactions | MECHANISM | MEMBRANE | MULTIDISCIPLINARY SCIENCES | RNA polymerase | SEGREGATION | ESCHERICHIA-COLI CHROMOSOME | DNA | superresolution | SINGLE-PARTICLE TRACKING | DYNAMICS | RIBOSOMES | Microscopy - methods | Green Fluorescent Proteins - metabolism | Promoter Regions, Genetic | Transcription, Genetic - drug effects | DNA, Bacterial - metabolism | Microbial Viability - drug effects | Time-Lapse Imaging | DNA-Binding Proteins - metabolism | Protein Binding - drug effects | Bacterial Proteins - metabolism | Rifampin - pharmacology | DNA-Directed RNA Polymerases - metabolism | Diffusion | Imaging, Three-Dimensional | Cluster Analysis | Physiological aspects | Observations | Microscope and microscopy | Methods | RNA polymerases | Protein-protein interactions | Biological Sciences | PNAS Plus
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11. Full Text Deconvolution-free Subcellular Imaging with Axially Swept Light Sheet Microscopy
by Dean, Kevin M and Roudot, Philippe and Welf, Erik S and Danuser, Gaudenz and Fiolka, Reto
Biophysical Journal, ISSN 0006-3495, 06/2015, Volume 108, Issue 12, pp. 2807 - 2815
The use of propagation invariant Bessel beams has enabled high-resolution subcellular light sheet fluorescence microscopy. However, the energy within the... 
MIGRATION | CELLS | COLLAGEN | DEEP | BIOPHYSICS | DYNAMICS | BINDING | VIEW | Green Fluorescent Proteins - metabolism | Humans | Imaging, Three-Dimensional - methods | Green Fluorescent Proteins - genetics | Microscopy, Fluorescence - instrumentation | Optical Imaging - instrumentation | Time-Lapse Imaging - instrumentation | Microscopy, Fluorescence - methods | Retinal Pigment Epithelium - ultrastructure | Imaging, Three-Dimensional - instrumentation | Time-Lapse Imaging - methods | Cell Culture Techniques | Optical Imaging - methods | Cell Movement | Fluorescence | Microscope and microscopy | Cells | Cell Biophysics
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12. Digital holographic microscopy: A quantitative label-free microscopy technique for phenotypic screening
by Rappaz, Benjamin and Breton, Billy and Shaffer, Etienne and Turcatti, Gerardo
Combinatorial Chemistry and High Throughput Screening, ISSN 1386-2073, 01/2014, Volume 17, Issue 1, pp. 80 - 88
Digital Holographic Microscopy (DHM) is a label-free imaging technique allowing visualization of transparent cells with classical imaging cell culture plates.... 
High-content screening | Image-based screen | Phenotypic drug discovery | Differential interference contrast | Phase contrast | Digital holography | Cell-based assay | differential interference contrast | image-based screen | PHASE-CONTRAST | RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | phase contrast | phenotypic drug discovery | digital holography | high-content screening | TECHNOLOGIES | IMAGES | ASSAYS | PHARMACOLOGY & PHARMACY | CHEMISTRY, APPLIED | LIVING CELLS | Cell Line | Humans | Rats | Time-Lapse Imaging | Chloroquine - pharmacology | Phenotype | Animals | Cytotoxins - pharmacology | Myocytes, Cardiac - drug effects | Image Processing, Computer-Assisted | Microscopy, Phase-Contrast - methods | Holography - methods | Biological Assay | HeLa Cells | Myocytes, Cardiac - ultrastructure | Doxorubicin - pharmacology
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13. Full Text Vancomycin sorption on activated sludge Gram+ bacteria rather than on EPS; 3D Confocal Laser Scanning Microscopy time-lapse imaging
by Louvet, J.N and Carrion, C and Stalder, T and Alrhmoun, M and Casellas, M and Potier, O and Pons, M.N and Dagot, C
Water Research, ISSN 0043-1354, 11/2017, Volume 124, pp. 290 - 297
Antibiotics-bacteria interactions depend on antibiotic concentration at the scale of bacteria. This study investigates how vancomycin penetrates into activated... 
Extracellular polymeric substances | Antibiotic | Adsorption | Autofluorescence microscopy | Activated-sludge | SEWAGE-SLUDGE | RESISTANT-BACTERIA | PART I | BIODEGRADATION | PHARMACEUTICALS | AQUATIC ENVIRONMENT | WATER RESOURCES | FATE | ENVIRONMENTAL SCIENCES | WATER TREATMENT PLANTS | ENGINEERING, ENVIRONMENTAL | SULFONAMIDE ANTIBIOTICS | Microscopy, Confocal | Sewage - chemistry | Vancomycin - chemistry | Flocculation | Water Pollutants, Chemical - chemistry | Bacteria | Waste Disposal, Fluid | Gram-Positive Bacteria | Time-Lapse Imaging | Sewage - microbiology | Index Medicus | Life Sciences | Biotechnology
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14. Full Text Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy
by Young, Jonathan W and Locke, James C.W and Altinok, Alphan and Rosenfeld, Nitzan and Bacarian, Tigran and Swain, Peter S and Mjolsness, Eric and Elowitz, Michael B
Nature Protocols, ISSN 1754-2189, 01/2012, Volume 7, Issue 1, pp. 80 - 88
Quantitative single-cell time-lapse microscopy is a powerful method for analyzing gene circuit dynamics and heterogeneous cell behavior. We describe the... 
FLUCTUATING ENVIRONMENTS | EPIGENETIC INHERITANCE | PROTEIN | BIOCHEMICAL RESEARCH METHODS | SWITCH | NOISE | DIFFERENTIATION | LEVEL | FEEDBACK | Time-Lapse Imaging - methods | Microscopy, Fluorescence - methods | Gene Expression Regulation, Bacterial | Single-Cell Analysis | Escherichia coli - genetics
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15. Full Text Imaging of nucleic acids with atomic force microscopy
by Lyubchenko, Yuri L and Shlyakhtenko, Luda S and Ando, Toshio
Methods, ISSN 1046-2023, 2011, Volume 54, Issue 2, pp. 274 - 283
Atomic force microscopy (AFM) is a key tool of nanotechnology with great importance in applications to DNA nanotechnology and to the recently emerging field of... 
Atomic force microscopy | RNA nanostructures | DNA dynamics | RNA assembly | AFM | DNA nanostructures | High-speed AFM | Holliday junctions | STUDYING BIOLOGICAL MACROMOLECULES | SELF-ASSEMBLED MONOLAYERS | COLI RNA-POLYMERASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | DYNAMIC BIOMOLECULAR PROCESSES | ORIENTED PYROLYTIC-GRAPHITE | SUPERCOILED DNA | ELECTRODE SURFACE | SCANNING-TUNNELING-MICROSCOPY | PROTEIN-DNA COMPLEXES | SURFACE-CHEMISTRY | DNA - chemistry | Silanes - chemistry | Aluminum Silicates - chemistry | Surface Properties | Time-Lapse Imaging - methods | Microscopy, Atomic Force - methods | DNA, Cruciform - chemistry | Nucleic Acid Conformation | RNA - chemistry | Propylamines | RNA | DNA | Microscope and microscopy
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