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tophat (46) 46
beam shaping (23) 23
flattop (16) 16
science & technology (13) 13
homogenizing (11) 11
life sciences & biomedicine (10) 10
rna-seq (9) 9
beams (8) 8
shapers (8) 8
tophat transform (8) 8
exact sciences and technology (7) 7
tophat变换 (7) 7
gene expression (6) 6
transcriptome (6) 6
bioinformatics (5) 5
drilling (5) 5
flat-top (5) 5
holography (5) 5
image processing (5) 5
lasers (5) 5
mapping (5) 5
micromachining (5) 5
optics (5) 5
physics (5) 5
software (5) 5
tophat transformation (5) 5
algorithms (4) 4
biochemistry & molecular biology (4) 4
bowtie (4) 4
cladding (4) 4
communication, education, history, and philosophy (4) 4
cufflinks (4) 4
fundamental areas of phenomenology (4) 4
general (4) 4
humans (4) 4
image segmentation (4) 4
laser beams (4) 4
neurosciences (4) 4
neurosciences & neurology (4) 4
physics literature and publications (4) 4
scribing (4) 4
sequence analysis, rna (4) 4
spots (4) 4
supergauss (4) 4
technology (4) 4
tophat filtering (4) 4
animals (3) 3
applied sciences (3) 3
biochemical research methods (3) 3
breast cancer risks (3) 3
cgh (3) 3
computer-aided diagnosis (3) 3
design engineering (3) 3
filters (3) 3
fired contacts (3) 3
galvo scanner (3) 3
gene expression profiling (3) 3
hardening (3) 3
high-throughput nucleotide sequencing (3) 3
image edge detection (3) 3
laser optical systems: design and operation (3) 3
licenses (3) 3
mammogram (3) 3
mopa laser (3) 3
morphology (3) 3
rna (3) 3
rna sequencing (3) 3
samtools (3) 3
short pulse laser (3) 3
spatial light modulator (3) 3
tophat algorithm (3) 3
adaptor proteins, signal transducing - genetics (2) 2
adult (2) 2
alcohol (2) 2
allele-specific expression (2) 2
amino acid polymorphism (2) 2
analysis (2) 2
automobiles (2) 2
beam characteristics: profile, intensity, and power; spatial pattern formation (2) 2
behavioral sciences (2) 2
biomedical imaging (2) 2
cancer (2) 2
character recognition (2) 2
computational biology - methods (2) 2
computed tomography (2) 2
computer science (2) 2
computer simulation (2) 2
confocal microscopy (2) 2
cuffdiff (2) 2
cylinders (2) 2
degradation (2) 2
detectors (2) 2
dicom (2) 2
differential allelic expression (2) 2
edger (2) 2
engineering (2) 2
ethanol (2) 2
fel (2) 2
female (2) 2
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1. Full Text The novel fusion transcript NR5A2‐KLHL29FT is generated by an insertion at the KLHL29 locus
by Sun, Zhenguo and Ke, Xiquan and Salzberg, Steven L and Kim, Daehwan and Antonescu, Valentin and Cheng, Yulan and Huang, Binbin and Song, Jee Hoon and Abraham, John M and Ibrahim, Sariat and Tian, Hui and Meltzer, Stephen J
Cancer, ISSN 0008-543X, 05/2017, Volume 123, Issue 9, pp. 1507 - 1515
fusion transcript | KLHL29 insertion | TopHat‐Fusion | polymorphism | NR5A2 (nuclear receptor subfamily 5 | group A | member 2)‐Kelch‐like family member 29 fusion transcript (KLHL29FT | member 2)-Kelch-like family member 29 fusion transcript (KLHL29FT | TopHat-Fusion | Life Sciences & Biomedicine | Oncology | Science & Technology | Colonic Neoplasms - genetics | Humans | Receptors, Cytoplasmic and Nuclear - genetics | RNA, Messenger - metabolism | Colon - metabolism | Colonic Neoplasms - metabolism | Sequence Analysis, RNA | Oncogene Proteins, Fusion - genetics | Adaptor Proteins, Signal Transducing - genetics | Germ-Line Mutation | High-Throughput Nucleotide Sequencing | Mutagenesis, Insertional | Real-Time Polymerase Chain Reaction | Polymerase chain reaction | RNA sequencing | Genetic aspects | Research | Cancer | Transcription | Colorectal cancer | Insertion | Genomes | Gene expression | Tissues | Ribonucleic acid--RNA | Gene polymorphism | Chromosome 2 | Chromosome 1 | Gene sequencing | Studies | Algorithms | Colon cancer | Colon | Chromosomes | Polymorphism | Index Medicus | Abridged Index Medicus | NR5A2-KLHL29FT
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2. Full Text Large-Scale Mass Spectrometric Detection of Variant Peptides Resulting from Nonsynonymous Nucleotide Differences
by Sheynkman, Gloria M and Shortreed, Michael R and Frey, Brian L and Scalf, Mark and Smith, Lloyd M
Journal of proteome research, ISSN 1535-3893, 01/2014, Volume 13, Issue 1, pp. 228 - 240
Tophat | SIFT | single nucleotide variants | allele-specific expression | variant peptides | SAMtools | differential allelic expression | PolyPhen-2 | Bowtie | RNA-Seq | mass spectrometry | proteoforms | amino acid polymorphism | single nucleotide polymorphisms | multiple proteases | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Amino Acid Sequence | Peptides - chemistry | Jurkat Cells | Base Sequence | Humans | Molecular Sequence Data | Mass Spectrometry - methods | Peptides - analysis | Nucleotides - chemistry | Index Medicus
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3. Full Text Improved Method for Enhancing Dark Images based on CLAHE and Morphological Reconstruction
by Manju, R.A and Koshy, G and Simon, Philomina
Procedia computer science, ISSN 1877-0509, 2019, Volume 165, pp. 391 - 398
Morphological Processing | Tophat transformation | fusion | dark image | Illumination reflection model | Weak illumination | PCA
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4. Variable beam shaping with using the same field mapping refractive beam shaper
by Laskin, Alexander and Laskin, Vadim
Progress in Biomedical Optics and Imaging - Proceedings of SPIE, ISSN 1605-7422, 2012, Volume 8236
homogenizing | hardening | tophat | apodization | beam shaping | inverse Gauss | flattop | super Gauss | Beams (radiation) | Wave attenuation | Lasers | Compensation | Mapping | Shapers | Cladding | Homogenizing
Conference Proceeding
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5. Full Text Illumination-Robust Foreground Extraction for Text Area Detection in Outdoor Environment
by Jun Lee and and Jeong-sik Park and Chung-pyo Hong and Yong-ho Seo
KSII transactions on Internet and information systems, ISSN 1976-7277, 01/2017, Volume 11, Issue 1, pp. 345 - 359
text area detection | illumination-robust image | histogram filtering | Tophat algorithm
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6. Full Text Low‐level laser therapy as a treatment for androgenetic alopecia
by Afifi, Ladan and Maranda, Eric L and Zarei, Mina and Delcanto, Gina M and Falto‐Aizpurua, Leyre and Kluijfhout, Wouter P and Jimenez, Joaquin J
Lasers in surgery and medicine, ISSN 0196-8092, 01/2017, Volume 49, Issue 1, pp. 27 - 39
alopecia | TOPHAT 655 | HairMax LaserComb | low‐level laser therapy (LLLT) | androgenetic alopecia | low-level laser therapy (LLLT) | Life Sciences & Biomedicine | Dermatology | Surgery | Science & Technology | Esthetics | Low-Level Light Therapy - methods | Humans | Middle Aged | Alopecia - radiotherapy | Hair - radiation effects | Male | Treatment Outcome | Young Adult | Patient Satisfaction - statistics & numerical data | Adult | Female | Alopecia - diagnosis | Hair - growth & development | Care and treatment | Alopecia | Patient satisfaction | Baldness | Lasers in surgery | Lasers in medicine | Index Medicus
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7. Full Text Transcriptome profiling of developing photoreceptor subtypes reveals candidate genes involved in avian photoreceptor diversification
by Enright, Jennifer M and Lawrence, Karen A and Hadzic, Tarik and Corbo, Joseph C
Journal of comparative neurology (1911), ISSN 0021-9967, 03/2015, Volume 523, Issue 4, pp. 649 - 668
chicken | SAMtools (RRID:nlx_154607) | Bowtie (RRID:OMICS_00653) | rod | transcriptome | photoreceptor | Cufflinks (RRID:OMICS_01304) | edgeR (RRID:OMICS_01308) | cone | Cuffdiff (RRID: OMICS_01969) | HTSeq (RRID:OMICS_01053) | RNA‐Seq | TopHat (RRID:OMICS_01257) | Cone | Rod | Photoreceptor | Transcriptome | EdgeR (RRID:OMICS_01308) | RNA-Seq | Chicken | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Zoology | Science & Technology | Retina - metabolism | Retina - growth & development | Opsins - genetics | Electroporation | Photoreceptor Cells, Vertebrate - cytology | Gene Expression Profiling | Chick Embryo | Cell Differentiation - genetics | Animals | Flow Cytometry | In Situ Hybridization | Chickens | Opsins - metabolism | Photoreceptor Cells, Vertebrate - metabolism | Index Medicus
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8. Full Text A 3D seismic study of the morphology and spatial distribution of buried coral banks in the Porcupine Basin, SW of Ireland
by Huvenne, V.A.I and De Mol, B and Henriet, J.-P
Marine geology, ISSN 0025-3227, 2003, Volume 198, Issue 1, pp. 5 - 25
mounds | tophat transformation | coral banks | 3D seismics | Porcupine Basin | Tophat transformation | Mounds | Coral banks
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9. Full Text Harnessing virtual machines to simplify next-generation DNA sequencing analysis
by Nocq, Julie and Celton, Magalie and Gendron, Patrick and Lemieux, Sebastien and Wilhelm, Brian T
Bioinformatics, ISSN 1367-4803, 09/2013, Volume 29, Issue 17, pp. 2075 - 2083
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Software | Genomics - methods | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Index Medicus | Life Sciences
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10. Full Text Validation of splicing events in transcriptome sequencing data
by Kaisers, Wolfgang and Ptok, Johannes and Schwender, Holger and Schaal, Heiner
International journal of molecular sciences, ISSN 1661-6596, 06/2017, Volume 18, Issue 6, p. 1110
TopHat | MaxEnt | RNA-seq | STAR | Splice sites | Biochemistry & Molecular Biology | Physical Sciences | Chemistry | Life Sciences & Biomedicine | Chemistry, Multidisciplinary | Science & Technology | Computational Biology - methods | Sequence Alignment | Algorithms | Introns - genetics | Sequence Analysis, RNA | Humans | RNA Splicing - genetics | Exons - genetics | Software | Transcriptome - genetics | Index Medicus
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11. Full Text Analysis of RNA-Seq Data Using TopHat and Cufflinks
by Ghosh, Sreya and Chan, Chon-Kit Kenneth
2016, Methods in Molecular Biology, ISBN 9781493931668, Volume 1374
TopHat | Transcriptome assembly | RNA-seq | Bowtie | Cuffdiff | Differential gene expression | Cufflinks | CummeRbund | Cuffmerge | Cuffcompare | Sequence Analysis, RNA - methods | Gene Expression Profiling - methods | Computational Biology - methods | Software | Genomics - methods | Transcriptome | Index Medicus
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12. Full Text Students Vote: A Comparative Study of Student Perceptions of Three Popular Web-Based Student Response Systems
by Ingalls, Victoria
Technology, knowledge and learning, ISSN 2211-1662, 05/2018, Volume 25, Issue 3, pp. 1 - 11
Learning Catalytics | TopHat | Student response system | Socrative | Clickers | Computer Oriented Programs | Undergraduate Students | Formative Evaluation | Student Attitudes | Audience Response Systems | Preferences | Statistics | Feedback (Response) | Smartphones | Classroom response systems | Students | Applications programs | Colleges & universities | Qualitative analysis | Technology Acceptance Model | Student attitudes | Technology utilization
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13. Full Text Voluntary wheel running reduces voluntary consumption of ethanol in mice: identification of candidate genes through striatal gene expression profiling
by Darlington, T. M and McCarthy, R. D and Cox, R. J and Miyamoto‐Ditmon, J and Gallego, X and Ehringer, M. A
Genes, brain and behavior, ISSN 1601-1848, 06/2016, Volume 15, Issue 5, pp. 474 - 490
wheel running | loss of righting reflex | tophat | striatum | RNA‐Seq | ethanol preference | ethanol consumption | hedonic substitution | edgeR | WGCNA | Wheel running | Striatum | Tophat | Ethanol consumption | RNA-Seq | Ethanol preference | Loss of righting reflex | Hedonic substitution | EdgeR | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Behavioral Sciences | Science & Technology | Physical Exertion - genetics | Receptors, Corticotropin-Releasing Hormone - metabolism | Transcriptome | Munc18 Proteins - metabolism | Receptors, Corticotropin-Releasing Hormone - genetics | Syntaxin 1 - metabolism | Gene Regulatory Networks | Corpus Striatum - metabolism | Proprotein Convertases - genetics | Potassium Channels - metabolism | Syntaxin 1 - genetics | GABA Plasma Membrane Transport Proteins - metabolism | Female | Munc18 Proteins - genetics | Receptors, Opioid, mu - metabolism | Mice, Inbred C57BL | Proprotein Convertases - metabolism | Calmodulin-Binding Proteins - metabolism | Alcohol Drinking - genetics | Potassium Channels - genetics | GABA Plasma Membrane Transport Proteins - genetics | Animals | Receptors, GABA-A - genetics | Adaptor Proteins, Signal Transducing - genetics | Corpus Striatum - physiology | Running | Trans-Activators - metabolism | Mice | Receptors, GABA-A - metabolism | Receptors, Opioid, mu - genetics | Adaptor Proteins, Signal Transducing - metabolism | RNA sequencing | Quantitative genetics | Alcohol, Denatured | Messenger RNA | Analysis | Genes | Genetic research | Alcohol | Genetic transcription | Consumption data | Studies | Ethanol | Gene expression | Index Medicus
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