X
Search Filters
Format Format
Subjects Subjects
Subjects Subjects
X
Sort by Item Count (A-Z)
Filter by Count
tophat (268) 268
index medicus (167) 167
rna-seq (105) 105
gene (99) 99
gene expression (99) 99
humans (70) 70
genes (68) 68
animals (64) 64
rna (64) 64
transcriptome (63) 63
genomes (61) 61
genomics (61) 61
rna sequencing (57) 57
analysis (53) 53
expression (50) 50
multidisciplinary sciences (49) 49
gene expression profiling (48) 48
genetics & heredity (48) 48
research (47) 47
ribonucleic acid--rna (44) 44
bioinformatics (42) 42
biotechnology & applied microbiology (41) 41
genetic aspects (40) 40
genome (38) 38
research article (38) 38
genetics (37) 37
proteins (37) 37
medicine (36) 36
biochemistry & molecular biology (32) 32
sequence analysis, rna (29) 29
sequence analysis, rna - methods (29) 29
software (29) 29
gene-expression (27) 27
mice (27) 27
science (27) 27
article (25) 25
reveals (25) 25
seq (25) 25
transcription (25) 25
expression analysis (24) 24
gene expression profiling - methods (24) 24
gene sequencing (24) 24
identification (24) 24
alternative splicing (23) 23
beam shaping (23) 23
cancer (23) 23
genetic transcription (23) 23
high-throughput nucleotide sequencing (23) 23
male (23) 23
physiological aspects (23) 23
biochemical research methods (22) 22
computational biology (22) 22
female (22) 22
biology (21) 21
mathematical & computational biology (20) 20
ribonucleic acid (20) 20
evolution (19) 19
genetic research (19) 19
usage (19) 19
cell biology (18) 18
studies (18) 18
transcriptome - genetics (18) 18
alignment (17) 17
oncology (17) 17
annotation (16) 16
biology and life sciences (16) 16
biotechnology (16) 16
dna methylation (16) 16
flattop (16) 16
methods (16) 16
plant sciences (16) 16
tool (16) 16
algorithms (15) 15
growth (15) 15
health aspects (15) 15
protein (15) 15
rna - genetics (15) 15
database (14) 14
metabolism (14) 14
molecular biology (14) 14
mutation (14) 14
quantification (14) 14
sequence (14) 14
deoxyribonucleic acid--dna (13) 13
differentiation (13) 13
food and beverages (13) 13
life sciences (13) 13
molecular sequence annotation (13) 13
high-throughput nucleotide sequencing - methods (12) 12
neurosciences (12) 12
rna, long noncoding - genetics (12) 12
rna, messenger - genetics (12) 12
apoptosis (11) 11
computational biology - methods (11) 11
differential expression (11) 11
homogenizing (11) 11
isoforms (11) 11
pathways (11) 11
prediction (11) 11
research and analysis methods (11) 11
more...
Language Language
Publication Date Publication Date
Click on a bar to filter by decade
Slide to change publication date range


SCIENTIFIC REPORTS, ISSN 2045-2322, 05/2017, Volume 7
RNA-sequencing has become the gold standard for whole-transcriptome gene expression quantification. Multiple algorithms have been developed to derive gene... 
TOPHAT | GENE | QUANTIFICATION | MULTIDISCIPLINARY SCIENCES
Journal Article
Nature Methods, ISSN 1548-7091, 03/2015, Volume 12, Issue 4, pp. 357 - 360
HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments. HISAT uses... 
TRANSCRIPTOMES | TOPHAT | ALIGNMENT | GENE | ANNOTATION | BIOCHEMICAL RESEARCH METHODS | RNA-SEQ EXPERIMENTS | READS | Sequence Alignment - methods | Sequence Analysis, DNA - instrumentation | Limit of Detection | Pseudogenes - genetics | Sequence Analysis, RNA | Humans | RNA sequencing | Genetic research | Research | Genomics | Innovations | Ribonucleic acid--RNA | Genomes
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 09/2013, Volume 41, Issue 17, pp. e166 - e166
It is a challenge to classify protein-coding or non-coding transcripts, especially those re-constructed from high-throughput sequencing data of poorly... 
EVOLUTION | TOPHAT | INTEGRATIVE ANNOTATION | GENE | RNA-SEQ | BIOCHEMISTRY & MOLECULAR BIOLOGY | REGIONS | EXPRESSION | GENOME | PREDICTION | REVEALS | Proteins - genetics | Sequence Analysis, RNA - methods | Animals | RNA, Long Noncoding - chemistry | Humans | Gene Expression Profiling | Mice | Software | RNA, Long Noncoding - classification | Pongo - genetics | Methods Online
Journal Article
Nature Communications, ISSN 2041-1723, 06/2016, Volume 7, Issue 1, p. 11708
Journal Article
Reproduction, ISSN 1470-1626, 2019, Volume 157, Issue 1, pp. 111 - 122
Endogenous retroviruses (ERVs), which are abundant in mammalian genomes, can modulate the expression of nearby genes, and their expression is dynamic and... 
ACTIVATION | REPRODUCTIVE BIOLOGY | EXPRESSION ANALYSIS | PROTEIN | TOPHAT | GENE | DATABASE | TRANSPOSABLE ELEMENTS | DEVELOPMENTAL BIOLOGY
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2018, Volume 34, Issue 14, pp. 2384 - 2391
Abstract Motivation Alternative splicing and alternative transcription are a major mechanism for generating transcriptome diversity. Differential alternative... 
TOPHAT | GENE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SEQ EXPERIMENTS | EXPRESSION | Original Papers
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2016, Volume 1374, pp. 339 - 361
The recent advances in high throughput RNA sequencing (RNA-Seq) have generated huge amounts of data in a very short span of time for a single sample. These... 
TopHat | Transcriptome assembly | RNA-seq | Bowtie | Cuffdiff | Differential gene expression | Cufflinks | CummeRbund | Cuffmerge | Cuffcompare | Sequence Analysis, RNA - methods | Gene Expression Profiling - methods | Computational Biology - methods | Software | Genomics - methods | Transcriptome
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D252 - D257
Biogenesis and molecular function are two key subjects in the field of microRNA (miRNA) research. Deep sequencing has become the principal technique in... 
TOPHAT | DATABASE | GENE | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESOURCE | Sequence Analysis, RNA | Transcriptome | MicroRNAs - metabolism | RNA, Messenger - chemistry | High-Throughput Nucleotide Sequencing | Internet | RNA, Messenger - metabolism | Databases, Nucleic Acid | MicroRNAs - chemistry
Journal Article
Cancer Research, ISSN 0008-5472, 09/2015, Volume 75, Issue 18, pp. 3720 - 3727
Journal Article
Functional Plant Biology, ISSN 1445-4408, 2019, Volume 46, Issue 1, pp. 56 - 68
Panax notoginseng saponins (PNS) are major secondary metabolite of Panax notoginseng (Burk.) F. H. Chen. Previous studies identified that P. notoginseng... 
Saponins | Terpenoid backbone biosynthesis | Transcriptome | terpenoid backbone biosynthesis | transcriptome | L | PLANT SCIENCES | SE | TOPHAT | CADMIUM | GENE | ANTIOXIDANT | GROWTH | ROOTS | GINSENOSIDE BIOSYNTHESIS | saponins
Journal Article
Journal Article
Human Reproduction, ISSN 0268-1161, 09/2018, Volume 33, Issue 9, pp. 1735 - 1748
Abstract STUDY QUESTION Do long non-coding RNA (lncRNA) and messenger RNA (mRNA) profiles in follicular fluid from mature and immature ovarian follicles differ... 
RNA sequencing | Polycystic ovary syndrome | LncRNAs | MRNAs | Immature follicles | Follicular fluid | Mature follicles | lncRNAs | STEROIDOGENESIS | IDENTIFICATION | polycystic ovary syndrome | follicular fluid | OBSTETRICS & GYNECOLOGY | TRANSCRIPTS | mature follicles | REPRODUCTIVE BIOLOGY | TOPHAT | GENE | immature follicles | mRNAs | EXPRESSION | REVEALS
Journal Article
Journal of Experimental Botany, ISSN 0022-0957, 01/2019, Volume 70, Issue 1, pp. 205 - 215
The papain-like cysteine protease CEP1 is involved in clearing cellular contents during programmed cell death and regulating secondary wall thickening during... 
MECHANISM | WOOD | MODEL | PLANT SCIENCES | secondary wall | VACUOLE | TOPHAT | Cysteine protease | GENE | xylem development | BIOSYNTHESIS | AUTOLYSIS | DEGRADATION | TRACHEARY ELEMENT DIFFERENTIATION | programmed cell death | Research Papers
Journal Article
International Journal of Pharmaceutical Research, 04/2019, Volume 11, Issue 2, pp. 38 - 44
Journal Article
Gene, ISSN 0378-1119, 02/2019, Volume 686, pp. 92 - 103
The current study examined the liver transcriptomic profiles of the Large White different in developmental periods. It was performed on pigs of two... 
RNA sequencing | miR-18b | miR-130b-3p | Insulin-like growth factor 1 | Hepatic transcriptome | SYSTEM | PROFILES | TISSUE | PROLIFERATION | CANCER | INSULIN | TOPHAT | FATTY-ACID OXIDATION | GENETICS & HEREDITY | EFFICIENCY
Journal Article