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MALARIA JOURNAL, ISSN 1475-2875, 07/2019, Volume 18, Issue 1, pp. 219 - 13
BackgroundDeep sequencing of targeted genomic regions is becoming a common tool for understanding the dynamics and complexity of Plasmodium infections, but its... 
INFECTIOUS DISEASES | Molecular surveillance | Haplotype calling | Multiplicity of infection | Multiclonal infection | Malaria | TROPICAL MEDICINE | Plasmodium | Within-host diversity | Molecular epidemiology | DIVERSITY | Targeted amplicon deep sequencing | PARASITOLOGY | Infection | Plasmodium falciparum | Analysis | Genomes | Health aspects | Epidemiology
Journal Article
G3: Genes, Genomes, Genetics, ISSN 2160-1836, 05/2018, Volume 8, Issue 5, pp. 1513 - 1521
CRISPR/Cas9 is a transformative tool for making targeted genetic alterations. In plants, high mutation efficiencies have been reported in primary... 
Targeted mutagenesis | Lettuce | CRISPR/Cas9 | Amplicon sequencing | Germination | NHEJ | Thermotolerance | TRANSFORMATION | HIGH-DENSITY | CRISPR-CAS9 | amplicon sequencing | lettuce | targeted mutagenesis | GENOME | NUCLEASES | germination | CAENORHABDITIS-ELEGANS | OFF-TARGET | thermotolerance | TEMPERATURE | GENETICS & HEREDITY | PLANTS
Journal Article
BMC MEDICAL GENOMICS, ISSN 1755-8794, 08/2019, Volume 12, Issue 1, pp. 115 - 12
Background Targeted deep sequencing is a highly effective technology to identify known and novel single nucleotide variants (SNVs) with many applications in... 
Next generation sequencing (NGS) | GENETICS & HEREDITY | Deep sequencing | Liquid biopsies | Error correction | SENSITIVE DETECTION | Targeted sequencing | Ion torrent | CANCER | Cancer genomics | Variant calling | AGE | Usage | Physiological aspects | Genetic aspects | Research | Nucleotide sequencing | Single nucleotide polymorphisms | DNA sequencing | Cancer
Journal Article
New Phytologist, ISSN 0028-646X, 11/2017, Volume 216, Issue 3, pp. 682 - 698
Contents 682 I. 682 II. 683 III. 684 IV. 685 V. 685 VI. 688 VII. 690 VIII. 694 694 References 694 Summary With the rapid increase in the global population and... 
CRISPR | genome editing | Cas | crops | gene targeting (GT) | targeted mutagenesis | breeding | Targeted mutagenesis | Breeding | Crops | Gene targeting (GT) | Genome editing | PLANT GENOMES | OPEN CHROMATIN | DOUBLE-STRAND BREAKS | GUIDE RNA | WIDE PREDICTION | PLANT SCIENCES | DNA REPLICONS | PAIRED NICKASES | HOMOLOGOUS RECOMBINATION | HIGH-EFFICIENCY | Plant Breeding - methods | Recombination, Genetic | Plants, Genetically Modified | CRISPR-Cas Systems | Crops, Agricultural - genetics | Genome, Plant | Gene Editing | Multiplexing | Adaptations | Regulators | Soybeans | Transcription factors | Genomics | Carbon dioxide | Nucleotides | Hybridization | Transgenic plants | Fragmentation | Proteins | Amylose | Annotations | Genetically altered foods | Agricultural production | Catalysis | Chromosomes | Bioinformatics | Deoxyribonucleic acid--DNA | Crop yield | Agricultural chemicals | Enzymes | Agricultural management | Stability | Population growth | Inspection | Crop improvement | Sorghum | Gene expression | Biofuels | Agricultural economics | Embryos | Mutagenesis | Aptamers | Replication | Mutation | Wheat | Cereal crops | Biotechnology | Accessibility | Herbicide resistance | Amino acids | Genomes | Biosynthesis | Flowers | Agricultural land | DNA repair | Accumulation | Developing countries--LDCs | Abscission | Species diversity | Germplasm | Next-generation sequencing | DNA-binding protein | Agrochemicals | Bacteria | Agriculture | Lesions | Assemblies | Food | Cultivars | Barley | Polyploidy | Deactivation | Nucleotide sequence | Crop production | Amylopectin | Abiotic stress | Pesticides | Thymine | Aquatic plants | Corn | Adenine | Management | Animal feeds | Ribonucleic acid--RNA | Environmental impact | Climate change | Plant stress | Alleles | Variation | Gene mapping | Cancer | Index Medicus
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue 1, pp. 555 - 7
Background: High throughput sequencing requires bioinformatics pipelines to process large volumes of data into meaningful variants that can be translated into... 
Amplicon | Pipelines | Canary | PathOS | Targeted sequencing | Clinical diagnostics | Variant calling | ANNOVAR | BIOCHEMICAL RESEARCH METHODS | GENETIC-VARIANTS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ANNOTATION | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Diagnostic equipment (Medical) | Pipe lines
Journal Article
Practical Laboratory Medicine, ISSN 2352-5517, 11/2018, Volume 12, p. e00108
Genomic testing is often limited by the exhaustible nature of human tissue and blood samples. Here we describe biotinylated amplicon sequencing (BAmSeq), a... 
Targeted amplicon sequencing | Droplet digital PCR (ddPCR) | Next generation sequencing | Plasma DNA
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue 1, pp. 554 - 6
Background: Haloplex targeted resequencing is a popular method to analyze both germline and somatic variants in gene panels. However, involved wet-lab... 
Somatic | Next-generation sequencing | Targeted resequencing | Variant filtering | Germline | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CAPTURE
Journal Article
Molecular Genetics & Genomic Medicine, ISSN 2324-9269, 09/2014, Volume 2, Issue 5, pp. 379 - 382
Hereditary spastic paraplegias (HSP) constitute a rare and highly heterogeneous group of neurodegenerative disorders, defined clinically by progressive lower... 
SPG48 | AP5Z1 | hereditary spastic paraplegia | targeted next‐generation sequencing | Genes | Mutation | Paralysis | Clinical Report | targeted next-generation sequencing
Journal Article
Seminars in Ophthalmology, ISSN 0882-0538, 05/2019, Volume 34, Issue 4, pp. 223 - 231
Purpose: To review the value of next-generation sequencing (NGS) in identifying the pathogens which cause ocular infections, thereby facilitating prompt... 
keratitis | review article | dacryocystitis | targeted Amplicon sequencing (TAS) | endophthalmitis | ocular infection | conjunctivitis | uveitis | Next-generation sequencing (NGS) | microbial whole-genome sequencing (MWGS) | IDENTIFICATION | MICROSCOPY | TECHNOLOGIES | SURFACE | OPHTHALMOLOGY
Journal Article