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1. Full Text RNA polymerase II-TFIIB structure and mechanism of transcription initiation
by Kostrewa, Dirk and Zeller, Mirijam E and Armache, Karim-Jean and Seizl, Martin and Leike, Kristin and Thomm, Michael and Cramer, Patrick
Nature, ISSN 0028-0836, 11/2009, Volume 462, Issue 7271, pp. 323 - 330
To initiate gene transcription, RNA polymerase II (Pol II) requires the transcription factor IIB (B). Here we present the crystal structure of the complete Pol... 
YEAST | START SITE SELECTION | ANGSTROM RESOLUTION | ELONGATION COMPLEX | CRYSTAL-STRUCTURE | DNA | MULTIDISCIPLINARY SCIENCES | ZINC RIBBON | PREINITIATION COMPLEX | SACCHAROMYCES-CEREVISIAE | N-TERMINAL REGION | Amino Acid Sequence | Transcription Factor TFIIB - metabolism | Saccharomyces cerevisiae - genetics | Transcription Factor TFIIB - chemistry | Humans | Bacterial Proteins - chemistry | Models, Molecular | Molecular Sequence Data | DNA Polymerase II - metabolism | DNA Polymerase II - chemistry | TATA-Box Binding Protein - metabolism | Saccharomyces cerevisiae - metabolism | Sequence Alignment | Protein Structure, Quaternary | TATA-Box Binding Protein - chemistry | Physiological aspects | Transcription factors | Research | Structure | RNA polymerases | Proteins | Enzymes | Bacteria | E coli
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2. Full Text Structure and function of the initially transcribing RNA polymerase II-TFIIB complex
by Sainsbury, Sarah and Niesser, Jürgen and Cramer, Patrick
Nature, ISSN 0028-0836, 01/2013, Volume 493, Issue 7432, pp. 437 - 440
The general transcription factor (TF) IIB is required for RNA polymerase (Pol) II initiation and extends with its B-reader element into the Pol II active... 
ANGSTROM RESOLUTION | MECHANISM | INITIATION | TRANSCRIPTION FACTOR IIB | DNA | MULTIDISCIPLINARY SCIENCES | IN-VIVO | ARCHITECTURE | SACCHAROMYCES-CEREVISIAE | PREINITIATION COMPLEX | PROMOTER CLEARANCE | Protein Structure, Tertiary | Amino Acid Sequence | Biocatalysis | Transcription Factor TFIIB - metabolism | Transcription Factor TFIIB - chemistry | Models, Molecular | Molecular Sequence Data | Templates, Genetic | Crystallography, X-Ray | Structure-Activity Relationship | DNA - metabolism | RNA Polymerase II - metabolism | RNA, Messenger - metabolism | Protein Subunits - metabolism | DNA - genetics | RNA, Messenger - biosynthesis | Saccharomyces cerevisiae - enzymology | Protein Subunits - chemistry | Transcription Initiation, Genetic | RNA Polymerase II - chemistry | Physiological aspects | Transcription factors | RNA polymerases | Proteins | Enzymes | Mutation | RNA polymerase
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3. Full Text Structure of an RNA Polymerase II—TFIIB Complex and the Transcription Initiation Mechanism
by Xin Liu and David A. Bushnell and Dong Wang and Guillermo Calero and Rogar D. Kornberg
Science, ISSN 0036-8075, 1/2010, Volume 327, Issue 5962, pp. 206 - 209
Previous x-ray crystal structures have given insight into the mechanism of transcription and the role of general transcription factors in the initiation of the... 
Yeasts | RNA | DNA | TATA box | Reports | Biochemistry | Electron density | Cyclins | Zinc | Tunnels | Crystal structure | YEAST TFIIB | ANGSTROM RESOLUTION | HOLOENZYME | CORE PROMOTER ELEMENT | CRYSTAL-STRUCTURE | ELONGATION | MULTIDISCIPLINARY SCIENCES | MODEL | PREINITIATION COMPLEX | Protein Structure, Tertiary | Amino Acid Sequence | Catalytic Domain | Protein Structure, Secondary | Transcription Factor TFIIB - metabolism | Saccharomyces cerevisiae - genetics | Transcription Factor TFIIB - chemistry | Models, Molecular | Molecular Sequence Data | Crystallography, X-Ray | RNA Polymerase II - metabolism | Saccharomyces cerevisiae - chemistry | Saccharomyces cerevisiae - metabolism | Repetitive Sequences, Amino Acid | Saccharomyces cerevisiae Proteins - metabolism | Protein Conformation | Transcription, Genetic | Protein Interaction Domains and Motifs | RNA Polymerase II - chemistry | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Research | Structure | RNA polymerases | Molecular biology | RNA polymerase
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4. Full Text Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
by Larson, Adam G and Elnatan, Daniel and Keenen, Madeline M and Trnka, Michael J and Johnston, Jonathan B and Burlingame, Alma L and Agard, David A and Redding, Sy and Narlikar, Geeta J
Nature, ISSN 0028-0836, 07/2017, Volume 547, Issue 7662, pp. 236 - 240
Gene silencing by heterochromatin is proposed to occur in part as a result of the ability of heterochromatin protein 1 (HP1) proteins to spread across large... 
DECONVOLUTION | CHROMATIN | RECOGNITION | SPECIFICITY | ANALYTICAL ULTRACENTRIFUGATION | HISTONE H3 | MULTIDISCIPLINARY SCIENCES | MASS | PROTEINS | SPECTRA | ASSOCIATION | NIH 3T3 Cells | Phosphorylation | Chromosomal Proteins, Non-Histone - metabolism | Transcription Factor TFIIB - metabolism | Nucleosomes - chemistry | Humans | Gene Silencing | Solubility | Nucleosomes - metabolism | Nucleosomes - genetics | DNA - metabolism | Heterochromatin - chemistry | Chromosomal Proteins, Non-Histone - genetics | Animals | Heterochromatin - genetics | Heterochromatin - metabolism | Ligands | Mice | Chromosomal Proteins, Non-Histone - chemistry
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5. Full Text Structural dissection of an interaction between transcription initiation and termination factors implicated in promoter-terminator cross-talk
by Bratkowski, Matthew and Unarta, Ilona Christy and Zhu, Lizhe and Shubbar, Murtada and Huang, Xuhui and Liu, Xin
Journal of Biological Chemistry, ISSN 0021-9258, 2018, Volume 293, Issue 5, pp. 1651 - 1665
Functional cross-talk between the promoter and terminator of a gene has long been noted. Promoters and terminators are juxtaposed to form gene loops in several... 
transcription initiation factor | RNA-POLYMERASE-II | transcription regulation | START SITE SELECTION | transcription termination | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | general transcription factor (GTF) | FACTOR-TFIIB | GENE LOOPS | promoter-terminator cross-talk | gene looping | TFIIB | YEAST TFIIB | CONFORMATIONAL-CHANGE | Ssu72 | TATA BOX | DOMAIN PHOSPHATASE | RNA polymerase II | Response Elements | Transcription Factor TFIIB - metabolism | Transcription Factor TFIIB - chemistry | Humans | Models, Molecular | Multiprotein Complexes - genetics | Transcription Factor TFIIB - genetics | Carrier Proteins - genetics | Multiprotein Complexes - metabolism | Multiprotein Complexes - chemistry | Carrier Proteins - metabolism | Protein Structure, Quaternary | Protein Domains | Carrier Proteins - chemistry | Transcription Initiation, Genetic
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6. Full Text Architecture of the RNA polymerase II-Mediator core initiation complex
by Plaschka, C and Larivière, L and Wenzeck, L and Seizl, M and Hemann, M and Tegunov, D and Petrotchenko, E.V and Borchers, C.H and Baumeister, W and Herzog, F and Villa, E and Cramer, P
Nature, ISSN 0028-0836, 02/2015, Volume 518, Issue 7539, pp. 376 - 380
The conserved co-activator complex Mediator enables regulated transcription irntiation by RNA polymerase (Pol) II. Here we reconstitute an active 15-subunit... 
TATA-BOX | RECRUITMENT | PROTEIN | STRUCTURAL BASIS | MULTIDISCIPLINARY SCIENCES | CHEMICAL CROSS-LINKING | SUBCOMPLEX | TRANSCRIPTION INITIATION | PREINITIATION COMPLEX | HEAD MODULE | REVEALS | Phosphorylation | Transcription Factor TFIIB - metabolism | Mediator Complex - metabolism | Transcription Factor TFIIB - chemistry | Allosteric Regulation | RNA Polymerase II - ultrastructure | Saccharomyces cerevisiae - ultrastructure | Transcription Factor TFIIH - chemistry | RNA Polymerase II - metabolism | Protein Subunits - metabolism | Mediator Complex - chemistry | Mediator Complex - ultrastructure | Protein Stability | Transcription Initiation, Genetic | Binding Sites | RNA Polymerase II - chemistry | Protein Structure, Tertiary | Saccharomyces cerevisiae Proteins - ultrastructure | Models, Molecular | DNA - metabolism | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | DNA - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Transcription Factor TFIIH - metabolism | Protein Subunits - chemistry | Enzyme Activation | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Protein research | Genetic transcription | Research | RNA polymerases | Transcription factors | Yeast | Microscopy | RNA polymerase | Kinases | Deoxyribonucleic acid--DNA
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7. Full Text Polyglutamine domain modulates the TBP-TFIIB interaction: implications for its normal function and neurodegeneration
by Fang, Zhi-Hui and Warren, Stephen T and Shah, Anjali G and Li, Shihua and Ward, Elizabeth G and Li, Xiao-Jiang and Friedman, Meyer J
Nature Neuroscience, ISSN 1097-6256, 12/2007, Volume 10, Issue 12, pp. 1519 - 1528
Expansion of the polyglutamine (polyQ) tract in human TATA-box binding protein (TBP) causes the neurodegenerative disease spinocerebellar ataxia 17 (SCA17). It... 
TATA-BINDING PROTEIN | REPEAT EXPANSION | NEURONS IN-VITRO | TRANSCRIPTION | DISEASE | HUNTINGTIN | DOMINANT CEREBELLAR-ATAXIA | HEAT-SHOCK-PROTEIN-27 | EXPRESSION | NEUROSCIENCES | CELL-DEATH | Age Factors | Transcription Factor TFIIB - metabolism | Microscopy, Electron, Transmission - methods | Humans | Neoplasm Proteins - metabolism | TATA-Box Binding Protein - metabolism | Heat-Shock Proteins - genetics | Mutation - physiology | Neurons - ultrastructure | Transfection | TATA-Box Binding Protein - genetics | Chromatin Immunoprecipitation - methods | Neurons - metabolism | Neoplasm Proteins - genetics | Disease Models, Animal | Animals, Newborn | Brain - cytology | Polyglutamic Acid - metabolism | Neurodegenerative Diseases - pathology | Gene Expression Regulation - genetics | Heat-Shock Proteins - metabolism | Cells, Cultured | Rats | Mice, Transgenic | Neurodegenerative Diseases - genetics | Neurodegenerative Diseases - metabolism | Polyglutamic Acid - genetics | Down-Regulation - physiology | Animals | Neurodegenerative Diseases - physiopathology | Mice | Physiological aspects | Nervous system | Degeneration | DNA binding proteins | Research | Risk factors | Glutamine
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8. Full Text Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
by Akoulitchev, Alexandre and Chow, Natalie and Serra Barros, Ana and Ramadass, Aroul and Martianov, Igor
Nature, ISSN 0028-0836, 02/2007, Volume 445, Issue 7128, pp. 666 - 670
Alternative promoters within the same gene are a general phenomenon in gene expression. Mechanisms of their selective regulation vary from one gene to another... 
RNA-POLYMERASE-II | TFIIB | TATA-ELEMENT | CELLS | SITE | COMPLEX | SPECIFICITY | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | PROMOTER | EXPRESSION | RNA, Untranslated - metabolism | Transcription Factor TFIIB - metabolism | Epistasis, Genetic | Gene Expression Regulation, Enzymologic - genetics | Humans | Gene Silencing | Substrate Specificity | Transcription, Genetic - genetics | Promoter Regions, Genetic - genetics | RNA, Untranslated - genetics | TATA-Box Binding Protein - metabolism | Tetrahydrofolate Dehydrogenase - genetics | Genetics | Chromatin | Cellular biology | Gene expression | Ribonucleic acid--RNA | Ribonucleic acid | Promoter Regions (Genetics) | TATA-Box Binding Protein | RNA, Untranslated | Biochemistry, Molecular Biology | Tetrahydrofolate Dehydrogenase | Gene Expression Regulation, Enzymologic | Life Sciences | Transcription Factor TFIIB | Transcription, Genetic | Molecular biology
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9. Full Text Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms
by David A. Bushnell and Kenneth D. Westover and Ralph E. Davis and Roger D. Kornberg
Science, ISSN 0036-8075, 2/2004, Volume 303, Issue 5660, pp. 983 - 988
The structure of the general transcription factor IIB (TFIIB) in a complex with RNA polymerase II reveals three features crucial for transcription initiation:... 
Yeasts | Docks | RNA | DNA | TATA box | Transcription initiation site | Promoter regions | Research Articles | Hybridity | General transcription factors | Zinc | START SITE SELECTION | ANGSTROM RESOLUTION | PROTEIN INTERACTIONS | ELONGATION COMPLEX | MULTIDISCIPLINARY SCIENCES | FUNCTIONAL DOMAINS | ZINC RIBBON | PREINITIATION COMPLEX | SACCHAROMYCES-CEREVISIAE | INITIATION COMPLEX | N-TERMINAL REGION | Transcription Factor TFIIB - metabolism | Transcription Factor TFIIB - chemistry | Molecular Sequence Data | Templates, Genetic | Crystallography, X-Ray | RNA Polymerase II - metabolism | Zinc - chemistry | TATA-Box Binding Protein - metabolism | Nuclear Magnetic Resonance, Biomolecular | Transcription, Genetic | TATA-Box Binding Protein - chemistry | Binding Sites | RNA Polymerase II - chemistry | RNA - metabolism | Protein Structure, Tertiary | Amino Acid Sequence | Promoter Regions, Genetic | Nucleic Acid Hybridization | Protein Structure, Secondary | Crystallization | Models, Molecular | DNA - metabolism | RNA - chemistry | Transcription Factors, TFII - chemistry | DNA - chemistry | Saccharomyces cerevisiae Proteins - metabolism | TATA Box | Transcription Factors, TFII - metabolism | Protein Conformation | Saccharomyces cerevisiae Proteins - chemistry | Models | Chemical properties | Genetic transcription | RNA polymerases | Genetics | RNA polymerase
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10. Full Text Functional interplay between Mediator and TFIIB in preinitiation complex assembly in relation to promoter architecture
by Eychenne, Thomas and Novikova, Elizaveta and Barrault, Marie-Bénédicte and Alibert, Olivier and Boschiero, Claire and Peixeiro, Nuno and Cornu, David and Redeker, Virginie and Kuras, Laurent and Nicolas, Pierre and Werner, Michel and Soutourina, Julie
Genes and Development, ISSN 0890-9369, 09/2016, Volume 30, Issue 18, pp. 2119 - 2132
Mediator is a large coregulator complex conserved from yeast to humans and involved in many human diseases, including cancers. Together with general... 
TFIIB | RNA polymerase II transcription | Mediator | Promoter architecture | Saccharomyces cerevisiae | Preinitiation complex | RNA-POLYMERASE-II | RECRUITMENT | ACTIVATION | DEVELOPMENTAL BIOLOGY | GENOME | CELL BIOLOGY | YEAST | ORGANIZATION | preinitiation complex | TRANSCRIPTION FACTOR TFIIB | IN-VIVO | GENETICS & HEREDITY | promoter architecture | INITIATION COMPLEX | SUBUNIT | Chromatin - metabolism | Protein Binding - genetics | Saccharomyces cerevisiae - physiology | Promoter Regions, Genetic - physiology | Transcription Factor TFIIB - metabolism | Mediator Complex - metabolism | Saccharomyces cerevisiae - genetics | Protein Multimerization - genetics | Saccharomyces cerevisiae Proteins - metabolism | Mediator Complex - genetics | Mutation | Transcription factors | Genetic aspects | Research | Brewer's yeast | RNA polymerases | Life Sciences | Cognitive Sciences | Neurons and Cognition | Psychology and behavior | Neurobiology | Research Paper
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11. Full Text Yeast Rrn7 and Human TAF1B Are TFIIB-Related RNA Polymerase I General Transcription Factors
by Bruce A. Knutson and Steven Hahn
Science, ISSN 0036-8075, 9/2011, Volume 333, Issue 6049, pp. 1637 - 1640
Eukaryotic and archaeal multisubunit RNA polymerases (Pols) are structurally related and require several similar components for transcription initiation.... 
Proteins | Yeasts | Docks | RNA | Active sites | DNA | REPORTS | General transcription factors | Genetic mutation | Cyclins | RECRUITMENT | COMPLEX | PROTEIN | TBP | INITIATION-FACTOR | MULTIDISCIPLINARY SCIENCES | RDNA TRANSCRIPTION | SL1 | SACCHAROMYCES-CEREVISIAE | BDP1 SUBUNITS | BINDING | Protein Structure, Tertiary | Amino Acid Sequence | Protein Structure, Secondary | Transcription Factor TFIIB - metabolism | Transcription Factor TFIIB - chemistry | Humans | Transcription Factor TFIIIB - chemistry | Transcription Factor TFIIIB - genetics | Molecular Sequence Data | RNA Polymerase I - metabolism | Saccharomyces cerevisiae Proteins - genetics | Protein Folding | TATA-Box Binding Protein - metabolism | Transcription Factor TFIIIB - metabolism | Sequence Alignment | Pol1 Transcription Initiation Complex Proteins - genetics | Pol1 Transcription Initiation Complex Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Pol1 Transcription Initiation Complex Proteins - chemistry | Transcription, Genetic | Protein Interaction Domains and Motifs | Amino Acid Substitution | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Transcription factors | Genetic aspects | Yeast fungi | RNA polymerases | Enzymes | Eukaryotes | Biosynthesis | Yeast | RNA polymerase
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12. Full Text Mapping the Protein Interaction Network for TFIIB-Related Factor Brf1 in the RNA Polymerase III Preinitiation Complex
by Seok-Kooi Khoo and Chih-Chien Wu and Yu-Chun Lin and Jin-Cheng Lee and Hung-Ta Chen
Molecular and Cellular Biology, ISSN 0270-7306, 02/2014, Volume 34, Issue 3, pp. 551 - 559
Classifications Services MCB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... 
TATA-BINDING PROTEIN | TERNARY COMPLEX | SHUTTLE VECTORS | STRUCTURAL BASIS | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | INITIATION-FACTOR-TFIIIB | TRANSCRIPTION FACTOR-IIIB | SACCHAROMYCES-CEREVISIAE | DNA COMPLEX | SUBUNIT | CELL BIOLOGY | Protein Structure, Tertiary | Transcription Factor TFIIB - metabolism | Saccharomyces cerevisiae - genetics | Transcription Factor TFIIIB - chemistry | Transcription Factor TFIIIB - genetics | RNA Polymerase III - metabolism | Transcription Factor TFIIB - genetics | Binding Sites - genetics | Saccharomyces cerevisiae Proteins - genetics | Blotting, Western | Protein Interaction Maps | TATA-Box Binding Protein - metabolism | RNA Polymerase III - chemistry | Saccharomyces cerevisiae - metabolism | Protein Interaction Mapping - methods | Transcription Factor TFIIIB - metabolism | RNA Polymerase III - genetics | TATA-Box Binding Protein - genetics | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Mutation | Transcription Initiation, Genetic | Saccharomyces cerevisiae Proteins - chemistry
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