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1. Full Text RNA-seq identifies SNP markers for growth traits in rainbow trout
by Salem, Mohamed and Vallejo, Roger L and Leeds, Timothy D and Palti, Yniv and Liu, Sixin and Sabbagh, Annas and Rexroad III, Caird E and Yao, Jianbo
PLoS ONE, ISSN 1932-6203, 05/2012, Volume 7, Issue 5, pp. e36264 - e36264
Fast growth is an important and highly desired trait, which affects the profitability of food animal production, with feed costs accounting for the largest... 
ABNORMAL GROWTH | POPULATION STRATIFICATION | MULTIDISCIPLINARY SCIENCES | MITOCHONDRIAL COMPLEX ACTIVITY | ONCORHYNCHUS-MYKISS | FEED-EFFICIENCY | SINGLE GENETIC LINE | SALMON SALMO-SALAR | LINKAGE ANALYSIS | ATLANTIC SALMON | GENOME-WIDE ASSOCIATION | Reproducibility of Results | Molecular Sequence Annotation | Male | Oncorhynchus mykiss - genetics | Transcriptome - genetics | Oncorhynchus mykiss - growth & development | Phenotype | Animals | Sequence Analysis, RNA | Cell Nucleus - genetics | Mitochondria - genetics | Genetic Markers - genetics | Polymorphism, Single Nucleotide - genetics | Female | Polymorphism, Genetic - genetics | High-Throughput Nucleotide Sequencing | Aquaculture | RNA sequencing | RNA | Growth | Fishes | Genes | Genomics | Aquaculture industry | Genetic aspects | Single nucleotide polymorphisms | Energy metabolism | Profitability | Growth rate | Accounting | Manufacturing engineering | Genomes | Single-nucleotide polymorphism | Gene polymorphism | Production costs | Gene sequencing | Mitochondria | Genetics | Fish | Economics | Nucleotide sequence | Trout | Breeding | Markers | Industrial engineering | Food production | Genetic diversity | Gene expression | Ribonucleic acid--RNA | Heterozygosity | Offspring | Gene frequency | Loss of heterozygosity | Mutation | Selective breeding | Polymorphism | Index Medicus | Ribonucleic acid
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2. Full Text The unusual rainbow trout sex determination gene hijacked the canonical vertebrate gonadal differentiation pathway
by Bertho, Sylvain and Herpin, Amaury and Branthonne, Adèle and Jouanno, Elodie and Yano, Ayaka and Nicol, Barbara and Muller, Thomas and Pannetier, Maëlle and Pailhoux, Eric and Miwa, Misako and Yoshizaki, Goro and Schartl, Manfred and Guiguen, Yann
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2018, Volume 115, Issue 50, pp. 12781 - 12786
Evolutionary novelties require rewiring of transcriptional networks and/or the evolution of new gene functions. Sex determination (SD), one of the most plastic... 
Evolution | Fish | Forkhead box proteins | Sex determination | Sex differentiation | EVOLUTIONARY | DMRT1 | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | FOXL2 | evolution | sex differentiation | DM-DOMAIN GENE | Y-CHROMOSOME | fish | SEQUENCE | MEDAKA | BINDING | sex determination | Testis - metabolism | Gene Regulatory Networks - genetics | Gonads - physiology | Sex Determination Processes - genetics | Sex Differentiation - genetics | Male | Oncorhynchus mykiss - genetics | Promoter Regions, Genetic - genetics | Cell Differentiation - genetics | Aromatase - genetics | Animals | Cell Nucleus - genetics | Estrogens - genetics | Female | Forkhead Box Protein L2 - genetics | Translocation, Genetic - genetics | Genetic aspects | Rainbow trout | Trout | Genes | Biological evolution | Estrogens | Sex | Evolutionary genetics | Gender differences | Vertebrates | Consumer goods | Rewiring | Aromatase | Forkhead protein | Rainbows | Differentiation | Classical pathway | Index Medicus | Life Sciences | Biological Sciences
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3. Full Text Mapping and Validation of the Major Sex-Determining Region in Nile Tilapia (Oreochromis niloticus L.) Using RAD Sequencing
by Palaiokostas, Christos and Bekaert, Michaël and Khan, Mohd G. Q and Taggart, John B and Gharbi, Karim and McAndrew, Brendan J and Penman, David J
PLoS ONE, ISSN 1932-6203, 07/2013, Volume 8, Issue 7, pp. e68389 - e68389
Sex in Oreochromis niloticus (Nile tilapia) is principally determined by an XX/XY locus but other genetic and environmental factors also influence sex ratio.... 
RATIOS | DE-NOVO | TEMPERATURE | SNP DISCOVERY | MULTIDISCIPLINARY SCIENCES | DETERMINING GENE | FISH | MARKERS | MEDAKA | LINKAGE | REVERSAL | Sex Determination Processes - genetics | Sex Differentiation - genetics | Genotype | Male | Cichlids - genetics | Sex Ratio | Homozygote | Animals | Chromosome Mapping - methods | Genetic Markers - genetics | Polymorphism, Single Nucleotide - genetics | Female | Heterozygote | Sequence Analysis, DNA - methods | Genetic Linkage | Genetic markers | Fishes | Genomics | Aquaculture industry | Family | Genetic aspects | Single nucleotide polymorphisms | Chromosomes | Sex differentiation | Genes | Sex | Genomes | Single-nucleotide polymorphism | High temperature | Males | Gene sequencing | Ratios | Fish | Deoxyribonucleic acid--DNA | Sex reversal | Ponds | Trout | Markers | Tilapia | Environmental factors | Loci | Studies | Sex ratio | Progeny | Oreochromis niloticus | Genetic crosses | Genetic engineering | Females | Gene mapping | Aquaculture | DNA sequencing | Index Medicus | Deoxyribonucleic acid | DNA
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4. Full Text Genomics of sablefish (Anoplopoma fimbria): Expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene
by Rondeau, Eric B and Messmer, Amber M and Sanderson, Dan S and Jantzen, Stuart G and von Schalburg, Kristian R and Minkley, David R and Leong, Jong S and Macdonald, Graham M and Davidsen, Amanda E and Parker, William A and Mazzola, Rosetta S.A and Campbell, Briony and Koop, Ben F
BMC Genomics, ISSN 1471-2164, 07/2013, Volume 14, Issue 1, pp. 452 - 452
Background: The sablefish (order: Scorpaeniformes) is an economically important species in commercial fisheries of the North Pacific and an emerging species in... 
Conserved synteny | Sex-specific sequences | Microsatellite | Black cod | SNP | Gonadal soma-derived factor | Linkage map | Sablefish | Threespine stickleback | RAINBOW-TROUT | SEQUENCES | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DNA | GENETICS & HEREDITY | FISH | MEDAKA | DUPLICATION | TROUT ONCORHYNCHUS-MYKISS | REVEALS | Fishes - genetics | Synteny - genetics | Sex Determination Processes - genetics | Genomics | Genome, Mitochondrial - genetics | Male | Chromosome Mapping | Phylogeny | Sex Characteristics | Genotyping Techniques | Phenotype | Animals | Mitochondria - genetics | Genetic Markers - genetics | Female | Smegmamorpha - genetics | Fishes - physiology | Sexual behavior in animals | Genetic aspects | Research | Fish industry | Genes | Fisheries | Genomes | Genetic screening | Animal behavior | Analysis | Fishes | Aquaculture industry | Genetic research | Single nucleotide polymorphisms | Fish | Genetics | Aquaculture | Index Medicus
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5. Full Text Rapid Spread of Invasive Genes into a Threatened Native Species
by Benjamin M. Fitzpatrick and Jarrett R. Johnson and D. Kevin Kump and Jeramiah J. Smith and S. Randal Voss and H. Bradley Shaffer and Douglas Futuyma
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2010, Volume 107, Issue 8, pp. 3606 - 3610
When introduced or cultivated plants or animals hybridize with their native relatives, the spread of invasive genes into native populations might have... 
Population ecology | Ecological genetics | Ponds | Ecological invasion | Evolutionary genetics | Tigers | Salamanders | Hybridity | Population genetics | Genetic hybridization | Genetics | Hybridization | California Tiger Salamander | Ambystoma | Conservation | ZONE | MULTIDISCIPLINARY SCIENCES | LANDSCAPE GENETICS | POPULATIONS | SALAMANDER AMBYSTOMA-CALIFORNIENSE | hybridization | conservation | genetics | WESTSLOPE CUTTHROAT TROUT | HYBRID TIGER SALAMANDERS | SELECTION | Genetic Variation | Genetic Drift | Animals | Alleles | Selection, Genetic | California | Extinction, Biological | Genetic Markers | Endangered Species | Chimera - genetics | Evolution, Molecular | Genes | Genetic aspects | Research | Plants | Properties | Health aspects | Endangered & extinct species | Genetic markers | Computer simulation | Federal legislation | Native species | Nonnative species | Index Medicus | Biological Sciences
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6. Full Text A microsatellite-based linkage map of salt tolerant tilapia (Oreochromis mossambicus x Oreochromis spp.) and mapping of sex-determining loci
by Liu, Feng and Sun, Fei and Li, Jian and Xia, Jun Hong and Lin, Grace and Tu, Rong Jian and Yue, Gen Hua
BMC Genomics, ISSN 1471-2164, 01/2013, Volume 14, Issue 1, pp. 58 - 58
Background: Tilapia is the common name for a group of cichlid fishes and is one of the most important aquacultured freshwater food fish. Mozambique tilapia and... 
Salt tolerance | Tilapia | Breeding | Growth | Sex | CICHLID FISH | CONSERVED SYNTENY | SYNAPTONEMAL COMPLEX | CHROMOSOMES | COMPARATIVE GENOME ANALYSIS | NILE TILAPIA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | NILOTICUS | GENETICS & HEREDITY | GENUS OREOCHROMIS | TROUT ONCORHYNCHUS-MYKISS | REVEALS | Species Specificity | Sex Determination Processes - genetics | Genomics | Molecular Sequence Annotation | Male | Chromosome Mapping | Tilapia - genetics | Microsatellite Repeats - genetics | Animals | Tilapia - physiology | Salt-Tolerance - genetics | Female | Quantitative Trait Loci - genetics | Microsatellites (Genetics) | Genetic aspects | Linkage (Genetics) | Research | Sex determination, Genetic | Quantitative genetics | Genetic markers | Genes | Fishes | Evolution | Fish as food | Comparative analysis | Fish | Genetics | Software | Aquaculture | Index Medicus
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7. Full Text A functional variant at miRNA-122 binding site in IL-1a 3' UTR predicts risk of recurrence in patients with oropharyngeal cancer
by Wang, Chengyuan and Sturgis, Erich M and Chen, Xingming and Wei, Qingyi and Li, Guojun
Oncotarget, 06/2016, Volume 7, Issue 23, pp. 34472 - 34479
IL-1a, an important regulator of immune and inflammation responses, has been implicated in cancer development and prognosis. An insertion (Ins)/deletion (Del)... 
IL1α | Recurrence | Biomarker | Oropharyngeal cancer | HPV | RAINBOW-TROUT | INSERTION/DELETION POLYMORPHISM | ONCORHYNCHUS-MYKISS | CERVICAL-CARCINOMA | HUMAN-PAPILLOMAVIRUS | OVARIAN-CANCER | biomarker | CELL BIOLOGY | recurrence | HEPATOCELLULAR-CARCINOMA | oropharyngeal cancer | SQUAMOUS-CELL CARCINOMAS | ASSOCIATION | IL1 alpha | IL1A GENE | Genetic Predisposition to Disease | Oropharyngeal Neoplasms - genetics | Carcinoma, Squamous Cell - genetics | Humans | Middle Aged | 3' Untranslated Regions - genetics | INDEL Mutation - genetics | Male | MicroRNAs - metabolism | Binding Sites - genetics | Mutagenesis, Insertional - genetics | Papillomavirus Infections | Neoplasm Recurrence, Local - pathology | Disease-Free Survival | Oropharynx - pathology | Inflammation - genetics | Female | Neoplasm Recurrence, Local - genetics | Polymorphism, Genetic - genetics | Interleukin-1alpha - genetics | MicroRNAs - genetics | DNA, Viral - genetics | Human papillomavirus 16 - genetics | Sequence Deletion - genetics | Index Medicus
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8. Full Text Watershed‐level brook trout genetic structuring: Evaluation and application of riverscape genetics models
by Nathan, Lucas R and Welsh, Amy B and Vokoun, Jason C
Freshwater Biology, ISSN 0046-5070, 03/2019, Volume 64, Issue 3, pp. 405 - 420
Stream connectivity promotes resilience and population viability of aquatic organisms. Landscape genetic approaches, traditionally applied to terrestrial... 
landscape genetics | barriers | Salvelinus fontinalis | connectivity | stream | fragmentation | ISOLATION-BY-DISTANCE | CONSERVATION | MARINE & FRESHWATER BIOLOGY | POPULATION-STRUCTURE | LAND-USE | ECOLOGY | DIVERSITY | ATLANTIC SALMON | BULL TROUT | Watershed management | Trout | Genetics | Networks | Populations | Terrestrial environments | River networks | Surfaces | Identification | Riparian environments | Heterogeneity | Creeks & streams | Demographics | Restoration | Vegetation cover | Dynamics | Dispersal | Mathematical models | Freshwater fish | Streams | Distance | Gravity | Evaluation | Gravitation | Landscape | Computer simulation | Probability theory | Watersheds | Rivers | Empirical analysis | Dispersion | Model accuracy | Flow | Gene flow | Barriers | Connectivity | Models | Aquatic organisms | Environmental restoration | Headwaters | Freshwater plants | Bayesian analysis | Viability | Dendritic structure
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9. Full Text Molecular characterization of IRF3 and IRF7 in rainbow trout, Oncorhynchus mykiss: Functional analysis and transcriptional modulation
by Holland, J.W and Bird, S and Williamson, B and Woudstra, C and Mustafa, A and Wang, T and Zou, J and Blaney, S.C and Collet, B and Secombes, C.J
Molecular Immunology, ISSN 0161-5890, 2008, Volume 46, Issue 2, pp. 269 - 285
Interferon regulatory factors (IRF) 3 and 7 in mammals are known to be crucial in regulating the type I interferon (IFN) response to viral infection as part of... 
Transfection | IRF3 | IFN signalling | EMSA | IRF7 | Rainbow trout ( Oncorhynchus mykiss) | Gene upregulation | ISRE | Rainbow trout (Oncorhynchus mykiss) | DNA-BINDING | INNATE ANTIVIRAL RESPONSE | I-INTERFERON | PROMOTER-REPORTER SYSTEM | BIOCHEMISTRY & MOLECULAR BIOLOGY | IMMUNOLOGY | SEPTICEMIA VIRUS VHSV | MX1 PROMOTER | INTERFERON REGULATORY FACTOR-7 | NF-KAPPA-B | CELL-LINE | ATLANTIC SALMON | Transcription, Genetic - drug effects | 3' Untranslated Regions - immunology | DNA, Complementary - genetics | 3' Untranslated Regions - genetics | Molecular Sequence Data | Interferon Regulatory Factor-7 - genetics | Interferon Type I - immunology | Interferon Regulatory Factor-3 - genetics | Fish Proteins - genetics | Base Sequence | DNA, Complementary - immunology | Response Elements - genetics | Oncorhynchus mykiss - immunology | Interferon Regulatory Factor-3 - immunology | Cell Line | Poly I-C - pharmacology | Fish Proteins - immunology | Oncorhynchus mykiss - genetics | Up-Regulation - genetics | Interferon Regulatory Factor-7 - immunology | Response Elements - immunology | Up-Regulation - drug effects | Animals | Up-Regulation - immunology | Interferon Type I - genetics | Transcription, Genetic - immunology | Transcription, Genetic - genetics | Interferon Inducers - pharmacology | Virus diseases | Antiviral agents | Trout | Analysis | Fishes | Luciferase | Genetic research | Tryptophan | Genetic aspects | Chemical properties | Biological response modifiers | Index Medicus
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10. Full Text Construction of High-Density Genetic Linkage Maps and Mapping of Growth-Related Quantitative Trail Loci in the Japanese Flounder (Paralichthys olivaceus)
by Song, Wentao and Pang, Renyi and Niu, Yuze and Gao, Fengtao and Zhao, Yongwei and Zhang, Jing and Sun, Jian and Shao, Changwei and Liao, Xiaolin and Wang, Lei and Tian, Yongsheng and Chen, Songlin
PLoS ONE, ISSN 1932-6203, 11/2012, Volume 7, Issue 11, pp. e50404 - e50404
High-density genetic linkage maps were constructed for the Japanese flounder (Paralichthys olivaceus). A total of 1624 microsatellite markers were polymorphic... 
BASS DICENTRARCHUS-LABRAX | OYSTER CRASSOSTREA-GIGAS | COMPARATIVE GENOME ANALYSIS | SEGREGATION DISTORTION | SPARUS-AURATA L | MULTIDISCIPLINARY SCIENCES | MICROSATELLITE MARKERS | RECOMBINATION RATES | SALMON SALMO-SALAR | TROUT ONCORHYNCHUS-MYKISS | SEA-BASS | Gene Library | Body Size | Genotype | Male | Genetic Markers | Lod Score | Microsatellite Repeats - genetics | Polymorphism, Genetic | Phenotype | Animals | Chromosome Mapping - methods | Sex Factors | Female | Models, Genetic | Genome | Quantitative Trait Loci | Flounder - genetics | Genetic Linkage | Quantitative genetics | Growth | Body weight | Fishes | Genomics | Genomes | Chromosomes | Recombination | Growth rate | Biological evolution | Mapping | Males | Fishing | Density | Maps | Catfish | Genetics | Fish | Life sciences | Deoxyribonucleic acid--DNA | Linkage analysis | Microsatellites | Marker-assisted selection | Trout | Markers | Commercial fishing | Tilapia | Zebrafish | Loci | Flounder | Quantitative trait loci | Genetic markers | Fishery sciences | Genetic linkage | Spreads | Females | Gene mapping | Index Medicus | Deoxyribonucleic acid | DNA
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11. Full Text A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)
by Castaño-Sánchez, Cecilia and Fuji, Kanako and Ozaki, Akiyuki and Hasegawa, Osamu and Sakamoto, Takashi and Morishima, Kagayaki and Nakayama, Ichiro and Fujiwara, Atsushi and Masaoka, Tetsuji and Okamoto, Hiroyuki and Hayashida, Kengo and Tagami, Michihira and Kawai, Jun and Hayashizaki, Yoshihide and Okamoto, Nobuaki
BMC Genomics, ISSN 1471-2164, 10/2010, Volume 11, Issue 1, pp. 554 - 554
Background: Japanese flounder (Paralichthys olivaceus) is one of the most economically important marine species in Northeast Asia. Information on genetic... 
RAINBOW-TROUT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CHROMOSOME ARMS | GENETICS & HEREDITY | FISH | RECOMBINATION RATES | POPULATIONS | LOCI | MICROSATELLITE DNA MARKERS | LYMPHOCYSTIS DISEASE | TROUT ONCORHYNCHUS-MYKISS | ATLANTIC SALMON | Synteny - genetics | Japan | Molecular Sequence Annotation | Genome - genetics | Molecular Sequence Data | Male |