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Biochemical and Biophysical Research Communications, ISSN 0006-291X, 01/2019, Volume 509, Issue 1, pp. 32 - 39
Unc-51 like autophagy activating kinase 1 (ULK1) is a serine/threonine kinase and the mammalian functional homolog of yeast Atg1, and plays an essential role... 
Cardiac hypertrophy | Inflammation and fibrosis | ULK1 | ROS | Nrf-2/HO-1 | FIBROSIS | APOPTOSIS | BIOPHYSICS | PHOSPHORYLATION | INFLAMMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY
Journal Article
Autophagy, ISSN 1554-8627, 12/2014, Volume 10, Issue 12, pp. 2208 - 2222
Dysregulation of autophagy contributes to neuronal cell death in several neurodegenerative and lysosomal storage diseases. Markers of autophagy are also... 
β; AIF1/IBA1, allograft inflammatory factor 1 | SPTAN1, spectrin, α, non-erythrocytic 1 | LAMP1, lysosomal-associated membrane protein 1 | LC3, microtubule associated protein 1 light chain 3 | ACTB, actin | APC, adenomatous polyposis coli | ATG7, autophagy-related 7 | ULK1, unc-51 like autophagy activating kinase 1 | AIFM1, apoptosis-inducing factor, mitochondrion-associated, 1 | ATG5, autophagy-related 5 | autophagy flux | CASP3, caspase 3 | GFP, green fluorescent protein | autophagy | traumatic brain injury | CSPG4, chondroitin sulfate proteoglycan 4 | CAPS12, caspase 12 | neuronal cell death | ATG12, autophagy-related 12 | SQSTM1, sequestosome 1 | CD68, CD68 molecule | CCI, controlled cortical impact | RBFOX3, RNA binding protein, fox-1 homolog (C. elegans) 3 | LAMP2, lysosomal-associated membrane protein 2 | TBI, traumatic brain injury | lysosome | CTSD, cathepsin D | Traumatic brain injury | Autophagy | Neuronal cell death | Autophagy flux | Lysosome | NEURODEGENERATIVE DISEASE | UBIQUITIN | LYSOSOMAL STORAGE DISORDERS | CEREBRAL-CORTEX | RAT MODEL | CELL BIOLOGY | PATHWAY | DEGRADATION | MICE | EXPRESSION | PARKINSONS-DISEASE | Sequestosome-1 Protein | Heat-Shock Proteins - metabolism | Mice, Inbred C57BL | Phagosomes - metabolism | Neurons - cytology | Autophagy - physiology | Brain Injuries - metabolism | Apoptosis Regulatory Proteins - metabolism | Brain - metabolism | Animals | Cell Death - physiology | Neurons - metabolism | Adaptor Proteins, Signal Transducing - metabolism | Brain Injuries - pathology | Disease Models, Animal | Index Medicus
Journal Article
Autophagy, ISSN 1554-8627, 01/2015, Volume 11, Issue 1, pp. 88 - 99
Recently a noncanonical activity of autophagy proteins has been discovered that targets lipidation of microtubule-associated protein 1 light chain 3 (LC3) onto... 
RB1CC1/FIP200, RB1-inducible coiled-coil 1 | PIK3C3/VPS34, phosphatidylinositol 3-kinase | FYCO1, FYVE and coiled-coil domain containing 1 | V-ATPase, vacuolar-type H | ConA, concanamycin A | LAMP1, lysosomal-associated membrane protein 1 | MAP1LC3/LC3, microtubule-associated protein 1 light chain 3 | ATG, autophagy-related | chloroquine | Helicobacter pylori | ULK1/2, unc-51 like autophagy activating kinase 1/2 | entosis | LC3 | TLR, toll-like receptor | phagocytosis | LAP, LC3-associated phagocytosis | GFP, green fluorescent protein | MTOR, mechanistic target of rapamycin | autophagy | V-ATPase | SQSTM1/p62, sequestosome 1 | ATPase | PtdIns3K, phosphatidylinositol 3-kinase | CQ, chloroquine | TEM, transmission electron microscopy | PtdIns3P, phosphatidylinositol 3-phosphate | VacA, vacuolating toxin A | Baf, bafilomycin A | LAP | catalytic subunit type 3 | CALCOCO2/NDP52, calcium binding and coiled-coil domain 2 | lysosome | Entosis | Chloroquine | Lysosome | Autophagy | Phagocytosis | REACTIVE OXYGEN PRODUCTION | RAT HEPATOCYTES | VACUOLATING CYTOTOXIN | MEMBRANE | TOXIN | MACROPHAGES | CHAIN 3 PROTEIN | CELL BIOLOGY | NONCANONICAL AUTOPHAGY | EPITHELIAL-CELLS | HELICOBACTER-PYLORI | Lysosomes - drug effects | Water | Cell Line | Phagocytosis - drug effects | Phosphatidylinositol Phosphates - metabolism | Microtubule-Associated Proteins - metabolism | Humans | Monensin - pharmacology | Osmosis - drug effects | Vacuolar Proton-Translocating ATPases - metabolism | Autophagy - drug effects | Endosomes - metabolism | Lysosomes - ultrastructure | Chloroquine - pharmacology | Lipids - chemistry | Animals | Lysosomes - metabolism | Endosomes - drug effects | Endosomes - ultrastructure | Entosis - drug effects | Bacterial Proteins - metabolism | Mice | Index Medicus
Journal Article
Autophagy, ISSN 1554-8627, 12/2014, Volume 10, Issue 12, pp. 2223 - 2238
Impaired autophagy function and enhanced ARG2 (arginase 2)-MTOR (mechanistic target of rapamycin) crosstalk are implicated in vascular aging and... 
AKT/PKB, v-akt murine thymoma viral oncogene homolog 1 | SMC, smooth muscle cells | arginase type II deficient | SA-ß-gal, senescence-associated-β-gal | VWF, von Willebrand factor | HAEC, human aortic endothelial cells | senescence | nor-NOHA, N | | LC3, microtubule-associated protein 1 light chain 3 | ANOVA, analysis of variance | ULK1, unc-51 like autophagy activating kinase 1 | EC | atherosclerosis | MTOR, mechanistic target of rapamycin | autophagy | ARGINASE | PE, phosphatidylethanolamine | PtdIns3K, phosphatidylinositol 3-kinase | BECN1, Beclin 1, autophagy-related | Apolipoprotein E-deficient | arg2 | 1 | Three-MA, 3-methyladenine | shRNA, short hairpin RNA | RPS6KB1/S6K1, ribosomal protein S6 kinase, 70kDa, polypeptide 1 | endothelial cells | ARG1, arginase 1 | ω | AR, aortic roots | LDL, low-density lipoprotein | Baf A1, bafilomycin A | Atg, autophagy-related | HUVEC, human umbilical vein endothelial cells | PRKAA | SQSTM1/p62, sequestosome 1 | endothelial cell | WT, wild type | apoe | H160F, inactive mutant of mouse ARG2 | MTOR | BEC, S-12 bromoethyl-L-cystine-HCl | TP53/p53, tumor protein 53 | hydroxy-nor-Arginine | CMV, cytomegalovirus | RPS6, ribosomal protein S6 | ARG2, arginase 2 | NOS3/eNOS, nitric oxide synthase 3 (endothelial cell) | PRKAA/AMPK, protein kinase, AMP-activated, α catalytic subunit | Senescence | Atherosclerosis | Autophagy | Endothelial cells | ACTIVATED PROTEIN-KINASE | PHOSPHORYLATION | MECHANISMS | CELL BIOLOGY | LYSOSOMES | INHIBITION | NITRIC-OXIDE | DEGRADATION | S6 KINASE | STRESS | AMP-Activated Protein Kinases - metabolism | Atherosclerosis - pathology | TOR Serine-Threonine Kinases - metabolism | Humans | Arginase - metabolism | Cellular Senescence - physiology | Mice, Transgenic | Autophagy - physiology | Mechanistic Target of Rapamycin Complex 2 | Atherosclerosis - metabolism | Mechanistic Target of Rapamycin Complex 1 | Multiprotein Complexes - metabolism | Animals | Diet, High-Fat | Signal Transduction - physiology | Index Medicus
Journal Article
AUTOPHAGY, ISSN 1554-8627, 07/2015, Volume 11, Issue 7, pp. 1114 - 1129
Autophagy is induced during differentiation of human monocytes into macrophages that is mediated by CSF1/CSF-1/M-CSF (colony stimulating factor 1... 
apoptosis-related cysteine peptidase | CSF1 | DRS | EMR1 EGF-like module-containing mucin-like hormone receptor-like 1 | CSF1 colony stimulating factor 1 (macrophage) | UPSTREAM KINASE | PRKAA protein kinase AMP-activated | TFRC transferrin receptor | CELL BIOLOGY | caspase 8 | MAP1LC3B | CASP8 | STK11 serine | CMML | CALMODULIN | ULK1 unc-51 like autophagy activating kinase 1 | calmodulin-dependent protein kinase kinase 2 | autophagy | CMML chronic myelomonocytic leukemia | PLCB3 phospholipase C | CFLAR CASP8 and FADD-like apoptosis regulator | PLCG2 phospholipase C gamma 2 (phosphatidylinositol-specific) | G-protein coupled 6 | DEGRADATION | PRKAA1 protein kinase AMP-activated 1 catalytic subunit | MACROPHAGIC DIFFERENTIATION | PRKAA1 | differentiation | PHOSPHORYLATION | ITGAM integrin M | DEFA3 defensin 3 neutrophil-specific | ACTB actin | LC3B microtubule-associated protein 1 light chain 3 | primary monocyte | CAMKK2 | RIPK1 receptor (TNFRSF)-interacting serine-threonine kinase 1 | P2RY6 pyrimidinergic receptor P2Y | AMPK1 | P2RY6 | UDP uridine diphosphate | DEFA1 defensin 1 | calcium | WT wild-type | ACTIVATED PROTEIN-KINASE | dorsomorphin | DENDRITIC CELLS | FADD Fas (TNFRSF6)-associated via death domain | 3 (phosphatidylinositol-specific) | MACROAUTOPHAGY | CSF1R colony stimulating factor 1 receptor | ULK1 INDUCES AUTOPHAGY | PRKAA2 protein kinase AMP-activated 2 catalytic subunit | PRKAG1 protein kinase AMP-activated gamma 1 noncatalytic subunit | PLC phospholipase | threonine kinase 11 | CHRONIC MYELOMONOCYTIC LEUKEMIA
Journal Article
Autophagy, ISSN 1554-8627, 03/2015, Volume 11, Issue 3, pp. 460 - 471
In the present study we have established a vital role of autophagy in retinoic acid (RA)-induced differentiation of toll-like receptor (TLR)-stimulated human B... 
MAP1LC3B/LC3B, microtubule-associated protein 1 light chain 3 β | autophagy | B lymphocytes | Ig, immunoglobulin | CVID, common variable immune deficiency | CD180 | ATG, autophagy-related | ELISA, enzyme-linked immunosorbent assay | MTOR, mechanistic target of rapamycin (serine/threonine kinase) | CD180, CD180 molecule | PAMP, pathogen-associated molecular pattern, PML/RARA, promyelocytic leukemia/ retinoic acid receptor α | RA, all-trans retinoic acid | plasma cell differentiation | RP105 | retinoic acid | SQSTM1, sequestosome 1 | antibody secretion | IL, interleukin | BDS, bright detail similarity | TLR9 | ULK1, unc-51 like autophagy activating kinase 1 | ULK1 | RAR, retinoic acid receptor | TLR, toll-like receptor | Antibody secretion | Plasma cell differentiation | Autophagy | Retinoic acid | RAR | LC3B | sequestosome 1 | PROLIFERATION | unc-51 like autophagy activating kinase 1 | VITAMIN-A | CELL BIOLOGY | MAP1LC3B | autophagy-related | threonine kinase | ANTIBODY-RESPONSES | ALL-TRANS | RAT-LIVER | all-trans retinoic acid | mechanistic target of rapamycin (serine | IN-VIVO | RARA | SQSTM1 | ELISA | RECEPTOR | CD180 molecule | BDS | microtubule-associated protein 1 light chain 3 | CVID | METABOLISM | TLR | interleukin | pathogen-associated molecular pattern | immunoglobulin | common variable immune deficiency | MTOR | PML | retinoic acid receptor | PAMP | ATG | bright detail similarity | enzyme-linked immunosorbent assay | promyelocytic leukemia | toll-like receptor | DIFFERENTIATION | IMMUNE FUNCTION | Oligonucleotides - chemistry | Tretinoin - chemistry | Microtubule-Associated Proteins - metabolism | Humans | Receptors, Retinoic Acid - metabolism | Intracellular Signaling Peptides and Proteins - metabolism | Antigens, CD - metabolism | Autophagy-Related Protein-1 Homolog | RNA, Small Interfering - chemistry | Lymphocyte Activation - immunology | B-Lymphocytes - immunology | Lysosomes - metabolism | Immune System | Immunoglobulin G - biosynthesis | Signal Transduction - drug effects | Cell Differentiation - drug effects | CpG Islands | Transcription, Genetic | Antigens, CD19 - metabolism | Toll-Like Receptors - metabolism | Toll-Like Receptor 9 - metabolism | B-Lymphocytes - metabolism | Protein-Serine-Threonine Kinases - metabolism | Index Medicus
Journal Article
Autophagy, ISSN 1554-8627, 12/2014, Volume 10, Issue 12, pp. 2333 - 2345
The hypoxia inducible transcription factor HIF1 activates autophagy, a general catabolic pathway involved in the maintenance of cellular homeostasis.... 
SQSTM1/p62 (SQSTM1), sequestosome 1 | HIF1A, hypoxia inducible factor 1, α subunit (basic helix-loop-helix transcription factor) | bacteria | hypoxia inducible factor | AMPK, AMP-activated protein kinase | CRTC1/TORC1, CREB regulated transcription coactivator 1 | EEA1, early endosome antigen 1 | HBSS, Hank's balanced salt solution | TLR5, toll-like receptor 5 | ULK1, unc-51 like autophagy activating kinase 1 | AIEC, adherent invasive E. coli | ATG5, autophagy-related 5 | ATG16L1, autophagy-related 16-like 1 | CD, Crohn disease | MAP1LC3-II (LC3-II), microtubule-associated protein 1 light chain 3-II | CEACAM6, carcinoembryonic antigen-related cell adhesion molecule 6 (nonspecific cross reacting antigen) | LAP, LC3-associated phagocytosis | GFP, green fluorescent protein | autophagy | IRGM, immunity-related GTPase family, M | BECN1, Beclin 1, autophagy-related | TEM, transmission electron microscopy | Crohn disease | VAV2, vav 2 guanine nucleotide exchange factor | BNIP3L, BCL2/adenovirus E1B 19kDa interacting protein 3-like | MOI, multiplicity of infection | IBD, inflammatory bowel disease | LAP | Bacteria | Hypoxia inducible factor | Autophagy | IMPAIRED AUTOPHAGY | STRAIN LF82 | PROTEIN | CROHNS-DISEASE | MACROPHAGES | HYPOXIA-INDUCIBLE FACTORS | E. COLI | CELL BIOLOGY | ILEAL MUCOSA | ULK1 | TYPE-1 PILI | Cell Line | Intestinal Mucosa - metabolism | Epithelial Cells - metabolism | Hypoxia-Inducible Factor 1, alpha Subunit - metabolism | Epithelial Cells - microbiology | Humans | Crohn Disease - metabolism | Autophagy - physiology | Escherichia coli Infections - metabolism | Crohn Disease - immunology | Index Medicus
Journal Article
Autophagy, ISSN 1554-8627, 05/2015, Volume 11, Issue 5, pp. 812 - 832
By monitoring the fragmentation of a GST-BHMT (a protein fusion of glutathionine S-transferase N-terminal to betaine-homocysteine S-methyltransferase) reporter... 
GST-BHMT, a fusion protein of glutathionine S-transferase N-terminal to betaine-homocysteine S-methyltransferase | ATF4, activating transcription factor 4 | MTORC1, MTOR complex 1 | LSCS, linker-specific cleavage site | selective macroautophagy | RPS6KB1, ribosomal protein S6 kinase, 70kDa, polypeptide 1 | UPR, unfolded protein response | ATG7, autophagy-related 7 | ULK1, unc-51 like autophagy activating kinase 1 | TSC1/2, tuberous sclerosis 1/2 | BCL2, B-cell CLL/lymphoma 2 | XBP1, X-box binding protein 1 | ACACA/B, acetyl-CoA carboxylase α/β | BECN1, Beclin 1, autophagy-related | MTOR, mechanistic target of rapamycin (serine/threonine kinase) | 1 | SQSTM1, sequestosome 1 | HA, hemagglutinin | BHMT, betaine-homocysteine S-methyltransferase | GST-BHMT | DDIT3, DNA-damage-inducible transcript 3 | ATF6, activating transcription factor 6 | EBSS, Earle's Balanced Salt Solution | Cvt, cytoplasm-to-vacuole-targeting | RM, rich medium | proteasome inhibition | GST, glutathionine S-transferase | FRAG | MAP1LC3, microtubule-associated protein 1 light chain 3 | PRKAA, protein kinase, AMP-activated, α catalytic subunit | an autophagy-mediated cleavage product of the GST-BHMT reporter | NBR1, neighbor of BRCA1 gene 1 | ERN1, endoplasmic reticulum to nucleus signaling 1 | P4HB, prolyl 4-hydroxylase, β polypeptide | MAP2K7, mitogen-activated protein kinase kinase 7 | Baf A1, bafilomycin A | UPS, ubiquitin proteasome system | PRKAA/AMPK | EIF4EBP1, eukaryotic translation initiation factor 4E binding protein 1 | ACTB, actin, β | HSPA5, heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | MTOR | BHMT | EIF2AK3, eukaryotic translation initiation factor 2-α, kinase 3 | RHEB, Ras homolog enriched in brain | MAPK8, mitogen-activated protein kinase 8 | cargo receptors SQSTM1/p62 and NBR1 | ER, endoplasmic reticulum | CTNNB1, catenin (cadherin-associated protein), β 1, 88kDa | SIGNALING PATHWAYS | ER STRESS | KINASE | ENDOPLASMIC-RETICULUM STRESS | SELECTIVE AUTOPHAGY | CELL BIOLOGY | UNFOLDED PROTEIN RESPONSE | MONITORING AUTOPHAGY | FUSION PROTEIN | BETAINE HOMOCYSTEINE METHYLTRANSFERASE | MAINTAINS ENERGY | AMP-Activated Protein Kinases - metabolism | TOR Serine-Threonine Kinases - metabolism | Sequestosome-1 Protein | Humans | Recombinant Fusion Proteins - metabolism | Autophagy - drug effects | Lysosomes - metabolism | Ubiquitination - drug effects | Protein Processing, Post-Translational - drug effects | Protein Binding - drug effects | HEK293 Cells | Membrane Proteins - metabolism | Betaine-Homocysteine S-Methyltransferase - metabolism | Protein-Serine-Threonine Kinases - metabolism | Beclin-1 | Lysosomes - drug effects | Protein Structure, Tertiary | Endoplasmic Reticulum Stress - drug effects | Endoribonucleases - metabolism | Proteasome Inhibitors - pharmacology | Mitogen-Activated Protein Kinase 8 - metabolism | Glutathione Transferase - metabolism | Apoptosis Regulatory Proteins - metabolism | Leupeptins - pharmacology | Proteins - metabolism | Signal Transduction - drug effects | HeLa Cells | Proteasome Endopeptidase Complex - metabolism | Adaptor Proteins, Signal Transducing - metabolism | Protein Multimerization - drug effects | Index Medicus
Journal Article
Journal Article
Redox Biology, ISSN 2213-2317, 04/2015, Volume 4, Issue C, pp. 184 - 192
Journal Article
FEBS Letters, ISSN 0014-5793, 11/2015, Volume 589, Issue 22, pp. 3343 - 3353
Autophagy is an intracellular degradation system that, as a basic mechanism it delivers cytoplasmic components to the lysosomes in order to maintain adequate... 
Autophagosome biogenesis | Rab GTPase | Autophagosome–lysosome fusion | Autophagy | SNAP receptor | GTP | PAS | PtdIns3P | sequestosome 1 | TRAPP | LRRK1 | mechanistic target of rapamycin | 200 kD focal adhesion kinase family-interacting protein | unc-51 like autophagy activating kinase 1 | GAS-containing autophagosome-like vacuoles | FYCO1 | guanosine diphosphate | GDP | WD-repeat-interacting phosphoinositide proteins | CMA | guanosine nucleotide exchange factor | STX | AMD | mTOR | LC3 | GTPase activating protein | N-ethyl-maleimide-sensitive factor | NSF | endoplasmic reticulum exit sites | chaperone-mediated autophagy | autophagy-related protein | phosphatidylinositol 3-phosphate | light chain 3 | coat protein complex II | phagophore assembly site | Huntington disease | PKA | GEF | cAMP-dependent protein kinase | transport protein particle | GAP | NS4B | soluble N-ethyl-maleimide attachment proteins | FIP200 | GAS | MVB | AMPK | HCV | PIK3C3 | ULK1 | ERES | epidermal growth factor | SQSTM1 | class III phosphatidylinositol 3 kinase | AMP-activated protein kinase | FYVE and coiled-coil domain-containing 1 | SNARE | vacuolar protein sorting | COPII | non-structural protein 4B | age-related macular degeneration of the eye | multivesicular body | VPS | leucine-rich repeat kinase 1 | recycling endosome | WIPI | EGF | guanosine triphosphate | molecular weight | SNAP | Syntaxin | Streptococcus | phosphatidylethanolamine | ATG | GcAVs | Group A | Hepatitis C virus | DFCP1 | endoplasmic reticulum | double FYVE domain-containing protein 1 | Autophagosome-lysosome fusion | OXIDATIVE STRESS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLASMA-MEMBRANE | RAB24 GTPASE | SMALL GTPASE | NEGATIVE REGULATOR | CELL BIOLOGY | MEMBRANE-FUSION | PROMOTES AUTOPHAGY | LONGIN DOMAIN | BIOPHYSICS | MULTIVESICULAR BODIES | WIPI PROTEINS | rab GTP-Binding Proteins - metabolism | Animals | Proteins - metabolism | Biological Transport | Humans | Intracellular Space - metabolism | SNARE Proteins - metabolism | Proteins | Index Medicus
Journal Article