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1. Full Text Inference of the Protokaryotypes of Amniotes and Tetrapods and the Evolutionary Processes of Microchromosomes from Comparative Gene Mapping
by Uno, Yoshinobu and Nishida, Chizuko and Tarui, Hiroshi and Ishishita, Satoshi and Takagi, Chiyo and Nishimura, Osamu and Ishijima, Junko and Ota, Hidetoshi and Kosaka, Ayumi and Matsubara, Kazumi and Murakami, Yasunori and Kuratani, Shigeru and Ueno, Naoto and Agata, Kiyokazu and Matsuda, Yoichi
PLoS ONE, ISSN 1932-6203, 12/2012, Volume 7, Issue 12, pp. e53027 - e53027
Comparative genome analysis of non-avian reptiles and amphibians provides important clues about the process of genome evolution in tetrapods. However, there is... 
VERTEBRATE EVOLUTION | ORIGIN | BIRD | MULTIDISCIPLINARY SCIENCES | SEQUENCE | TURTLE | SEX-CHROMOSOMES | KARYOTYPE | GENOME ANALYSIS | INSIGHTS | REVEALS | Snakes - genetics | Turtles - genetics | Animals | Urodela - genetics | Xenopus - genetics | Humans | Lizards - genetics | Chickens - genetics | Chromosome Mapping | Alligators and Crocodiles - genetics | Evolution, Molecular | Frogs | Crocodiles | Genes | Analysis | Genomics | Turtles | Genomes | Amphibians | Crocodylidae | Reptiles | Linkages | Genomic analysis | Science | Amphibia | Birds | Vertebrates | Taxa | Maps | Evolution | Gene mapping | Chromosomes | Index Medicus
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2. Full Text Variation in Salamander Tail Regeneration Is Associated with Genetic Factors That Determine Tail Morphology
by Voss, Gareth J and Kump, D. Kevin and Walker, John A and Voss, S. Randal
PLoS ONE, ISSN 1932-6203, 07/2013, Volume 8, Issue 7, pp. e67274 - e67274
Very little is known about the factors that cause variation in regenerative potential within and between species. Here, we used a genetic approach to identify... 
NEWT | AMBYSTOMA-MEXICANUM | EVOLUTION | MULTIDISCIPLINARY SCIENCES | LIMB REGENERATION | QTL | NOTOPHTHALMUS-VIRIDESCENS | TISSUE REGENERATION | TRAIT | Tail - anatomy & histology | Animals | Urodela - genetics | Regeneration - genetics | Urodela - anatomy & histology | Tail - physiology | Female | Male | Genetic Markers | Quantitative Trait Loci | Urodela - physiology | Lod Score | Quantitative genetics | Genetic research | Genetic aspects | Genomics | Spinal cord | Traumatic brain injury | Terrestrial environments | Sex | Genomes | Biology | Males | Reptiles & amphibians | Phase transitions | Tails | Biological effects | Amputation | Cell cycle | Genetic factors | Metamorphosis | Genotypes | Deoxyribonucleic acid--DNA | Thyroid | Wound healing | Markers | Genetic diversity | Mammals | Gene expression | Quantitative trait loci | Regeneration | Offspring | Brain research | Morphology | Genetic crosses | Skin | Gene loci | Laboratory animals | Variation | Females | Evolution & development | Index Medicus | Deoxyribonucleic acid | DNA
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3. Full Text Trapped within the city: integrating demography, time since isolation and population‐specific traits to assess the genetic effects of urbanization
by Lourenço, André and Álvarez, David and Wang, Ian J and Velo‐Antón, Guillermo
Molecular Ecology, ISSN 0962-1083, 03/2017, Volume 26, Issue 6, pp. 1498 - 1514
Urbanization is a severe form of habitat fragmentation that can cause many species to be locally extirpated and many others to become trapped and isolated... 
alamandra salamandra | microsatellite | genetic isolation | demography | genetic drift | population effective size | Salamandra salamandra | MULTILOCUS GENOTYPE DATA | MOUSE PEROMYSCUS-LEUCOPUS | BIOCHEMISTRY & MOLECULAR BIOLOGY | LANDSCAPE GENETICS | INBREEDING COEFFICIENTS | SINGLE-SAMPLE | FIRE SALAMANDERS | EVOLUTIONARY BIOLOGY | LINKAGE DISEQUILIBRIUM | SALAMANDERS SALAMANDRA-SALAMANDRA | NEW-YORK-CITY | ECOLOGY | SIZE N-E | Genetic Variation | Geography | Genetics, Population | Animals | Demography | Urodela - genetics | Urbanization | Microsatellite Repeats | Spain | Genetic research | Analysis | Genetic diversity | Reptiles & amphibians | Population genetics | Index Medicus
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4. Full Text Genetic diversity and demography of the critically endangered Roberts’ false brook salamander (Pseudoeurycea robertsi) in Central Mexico
by Sunny, Armando and Duarte-deJesus, Luis and Aguilera-Hernández, Arlene and Ramírez-Corona, Fabiola and Suárez-Atilano, Marco and Percino-Daniel, Ruth and Manjarrez, Javier and Monroy-Vilchis, Octavio and González-Fernández, Andrea
Genetica, ISSN 0016-6707, 4/2019, Volume 147, Issue 2, pp. 149 - 164
Land use changes are threatening the maintenance of biodiversity. Genetic diversity is one of the main indicators of biological diversity and is highly... 
Life Sciences | Human Genetics | Endemic species | Plethodontidae | Trans-Mexican Volcanic Belt | Plant Genetics and Genomics | Microbial Genetics and Genomics | Conservation | Nevado de Toluca Volcano | Evolutionary Biology | Population genetics | Animal Genetics and Genomics | AMBYSTOMA-MACULATUM | COMPUTER-PROGRAM | FOREST FRAGMENTATION | LANDSCAPE GENETICS | MULTIPLE PATERNITY | GENETICS & HEREDITY | POPULATION-STRUCTURE | R-PACKAGE | AMPHIBIAN DECLINES | STATISTICAL TESTS | PLETHODON-CINEREUS | Animals | Urodela - genetics | Endangered Species | Ecosystem | Microsatellite Repeats | Polymorphism, Genetic | Cytochrome | Subpopulations | Demography | Microsatellites | Populations | Wildlife conservation | Endangered species | Genetic structure | Environmental changes | Population studies | Genetic diversity | Biodiversity | Land use | Biological diversity | Heterozygosity | Endangered & extinct species | Demographics | Mitochondria | Cytochrome b | Volcanic activity | Cytochromes | Volcanoes | Index Medicus
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5. Full Text Genetic Leakage After Adaptive and Nonadaptive Divergence in the Ensatina eschscholtzii Ring Species
by Ricardo J. Pereira and David B. Wake
Evolution, ISSN 0014-3820, 2009, Volume 63, Issue 9, pp. 2288 - 2301
The salamander Ensatina eschscholtzii is an example of a ring species in which extant intermediate stages of terminal forms have a nearly continuous range,... 
gene flow | polytypic species | hybridization | Adaptive divergence | secondary contact | speciation | Biological taxonomies | Gene flow | Reproductive isolation | Genetic variation | Admixtures | Evolutionary genetics | Evolution | Population structure | Population genetics | Hybridity | Secondary contact | Hybridization | Polytypic species | Speciation | POPULATION | COMPLEX | EVOLUTIONARY | HYBRID ZONES | SALAMANDERS | PATTERNS | EVOLUTIONARY BIOLOGY | CALIFORNIA | GENETICS & HEREDITY | ECOLOGY | PHYLOGEOGRAPHIC BREAKS | PLETHODONTIDAE | Genetics, Population | Gene Flow | Isoenzymes - genetics | Reproduction - genetics | Genotype | California | Genetic Markers | Biological Evolution | Animals | Urodela - genetics | Adaptation, Physiological - genetics | Hybridization, Genetic | Genetic Speciation | Research | Isolating mechanisms | Animal reproduction | Animal populations | Reptiles & amphibians | Index Medicus | Leakage | Hybrids | Databases | Races | Isoenzymes | Genetic diversity | Genomes | Differentiation
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6. Full Text A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
by Alexander Pyron, R and Wiens, John J
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 2011, Volume 61, Issue 2, pp. 543 - 583
► Large-scale molecular phylogenetic estimate for Amphibia. ► Based on 2871 species: 41 caecilians, 436 salamanders, and 2394 frogs. ► Species sampled for up... 
Anura | Systematics | Apoda | Caudata | Amphibia | Lissamphibia | Gymnophiona | Phylogeny | Supermatrix | LIVING AMPHIBIANS | DIVERSIFICATION | BIOGEOGRAPHY | GLOBAL PATTERNS | BIOCHEMISTRY & MOLECULAR BIOLOGY | FAMILY | EVOLUTIONARY BIOLOGY | HIGH TROPICAL DIVERSITY | GENETICS & HEREDITY | COMPLETE MITOCHONDRIAL GENOMES | RE-EVOLUTION | HISTORY | Anura - classification | Likelihood Functions | Animals | DNA, Mitochondrial - genetics | Urodela - genetics | Cell Nucleus - genetics | Bayes Theorem | Anura - genetics | Sequence Analysis, DNA | Urodela - classification | Frogs | Amphibians | Vertebrates | Genes | Classification | Strategy | Evolution | Sampling | Recognition | Index Medicus
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7. Full Text INTEGRATING COALESCENT AND ECOLOGICAL NICHE MODELING IN COMPARATIVE PHYLOGEOGRAPHY
by Bryan C. Carstens and Corinne L. Richards
Evolution, ISSN 0014-3820, 2007, Volume 61, Issue 6, pp. 1439 - 1454
Abstract Understanding the factors that contribute to the formation of population genetic structure is a central goal of phylogeographic research, but... 
ecological niche modeling | Coalescent modeling | statistical phylogeography | Pleistocene | comparative phylogeography | Biological taxonomies | Ecological modeling | Paleoclimatology | Ecological niches | Habitats | Evolutionary genetics | Evolution | Climate models | Modeling | Population genetics | Comparative phylogeography | Statistical phylogeography | Ecological niche modeling | PACIFIC-NORTHWEST | HYBRID ZONES | DICAMPTODON-ATERRIMUS | CLIMATE-CHANGE | POPULATION DIVERGENCE | GENE TREES | EVOLUTIONARY BIOLOGY | RANGE SHIFTS | SPECIES GEOGRAPHIC DISTRIBUTIONS | GENETICS & HEREDITY | ECOLOGY | ROCKY-MOUNTAINS | Anura - classification | Geography | Climate | Arvicolinae - physiology | Phylogeny | Urodela - physiology | Arvicolinae - genetics | North America | Salix - physiology | Anura - physiology | Likelihood Functions | Animals | Urodela - genetics | Models, Biological | Ecosystem | Salix - genetics | Anura - genetics | Arvicolinae - classification | DNA, Mitochondrial - chemistry | Salix - classification | Urodela - classification | Population Dynamics | Population ecology | Research | Models | Geological time | Index Medicus
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8. Full Text Ecological resistance surfaces predict fine‐scale genetic differentiation in a terrestrial woodland salamander
by Peterman, William E and Connette, Grant M and Semlitsch, Raymond D and Eggert, Lori S
Molecular Ecology, ISSN 0962-1083, 05/2014, Volume 23, Issue 10, pp. 2402 - 2413
Landscape genetics has seen tremendous advances since its introduction, but parameterization and optimization of resistance surfaces still poses significant... 
landscape genetics | circuitscape resistance | amphibian | compensatory movement | resistance optimization | Plethodon albagula | NATTERJACK TOAD | BIOCHEMISTRY & MOLECULAR BIOLOGY | LANDSCAPE RESISTANCE | FLOW | MOVEMENT BEHAVIOR | DISPERSAL | EVOLUTIONARY BIOLOGY | POPULATION DIFFERENTIATION | TOAD BUFO-CALAMITA | HABITAT | ECOLOGY | QUANTIFYING FUNCTIONAL CONNECTIVITY | PLETHODON-CINEREUS | Genetics, Population | Animals | Urodela - genetics | Gene Flow | Ecosystem | Linear Models | Models, Genetic | Urodela - physiology | Water - physiology | Population Dynamics | Algorithms | Analysis | Geospatial data | Genetic research | Environmental aspects | Amphibians | Mathematical optimization | Optimization algorithms | Genetic diversity | Reptiles & amphibians | Landscape ecology | Index Medicus
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9. Full Text Genetic drift and rapid evolution of viviparity in insular fire salamanders (Salamandra salamandra)
by Velo-Antón, G and Zamudio, K.R and Cordero-Rivera, A
Heredity, ISSN 0018-067X, 04/2012, Volume 108, Issue 4, pp. 410 - 418
Continental islands offer an excellent opportunity to investigate adaptive processes and to time microevolutionary changes that precede macroevolutionary... 
viviparity | rapid evolution | Salamandra salamandra | genetic drift | island | holocene | AMBYSTOMA-MACULATUM | MULTILOCUS GENOTYPE DATA | ADAPTIVE RADIATION | LANDSCAPE GENETICS | MOLECULAR PHYLOGENY | MICROSATELLITE LOCI | REPRODUCTIVE MODES | EVOLUTIONARY BIOLOGY | FAMILY SALAMANDRIDAE | ALLELE FREQUENCY DATA | GENETICS & HEREDITY | POPULATION-STRUCTURE | ECOLOGY | Biological Evolution | Genetic Variation | Geography | Genetic Drift | Animals | Genetics, Population - methods | Urodela - genetics | Genotype | Viviparity, Nonmammalian - genetics | Microsatellite Repeats - genetics | Population Dynamics | Spain | Usage | Microsatellites (Genetics) | Adaptation (Biology) | Research | Genetic variation | Evolution | Population genetics | Reptiles & amphibians | Index Medicus | Original
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10. Full Text Multilocus phylogeography and species delimitation in the cumberland plateau salamander, plethodon kentucki: Incongruence among data sets and methods
by Kuchta, Shawn R and Brown, Ashley D and Converse, Paul E and Highton, Richard
PLoS ONE, ISSN 1932-6203, 03/2016, Volume 11, Issue 3, pp. e0150022 - e0150022
Species are a fundamental unit of biodiversity, yet can be challenging to delimit objectively. This is particularly true of species complexes characterized by... 
GENE TREES | DNA-SEQUENCES | BAYES ESTIMATION | PHYLOGENETIC ANALYSIS | SPECIATION | MULTIDISCIPLINARY SCIENCES | ANCESTRAL POPULATION SIZES | NORTH-AMERICAN SALAMANDERS | DIVERGENCE TIME | ENSATINA-ESCHSCHOLTZII | MULTISPECIES COALESCENT | Genetic Variation | Animals | DNA, Mitochondrial - genetics | Urodela - genetics | Phylogeography | Databases, Genetic | Models, Genetic | Physiological aspects | Genetic aspects | Research | Salamanders | Distribution | Biological diversity | Trees | Genetic structure | Base pairs | Biological evolution | Phenotypic variations | Discordance | Population structure | Ecology | Mitochondrial DNA | Hybridization | Biodiversity | Population genetics | Loci | Datasets | Studies | Species diversity | Mitochondria | Phylogenetics | Population | Bayesian analysis | Index Medicus
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