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1. Full Text Viral perturbations of host networks reflect disease etiology
by Gulbahce, Natali and Yan, Han and Dricot, Amélie and Padi, Megha and Byrdsong, Danielle and Franchi, Rachel and Lee, Deok-Sun and Rozenblatt-Rosen, Orit and Mar, Jessica C and Calderwood, Michael A and Baldwin, Amy and Zhao, Bo and Santhanam, Balaji and Braun, Pascal and Simonis, Nicolas and Huh, Kyung-Won and Hellner, Karin and Grace, Miranda and Chen, Alyce and Rubio, Renee and Marto, Jarrod A and Christakis, Nicholas A and Kieff, Elliott and Roth, Frederick P and Roecklein-Canfield, Jennifer and DeCaprio, James A and Cusick, Michael E and Quackenbush, John and Hill, David E and Münger, Karl and Vidal, Marc and Barabási, Albert-László
PLoS Computational Biology, ISSN 1553-734X, 06/2012, Volume 8, Issue 6, p. e1002531
Many human diseases, arising from mutations of disease susceptibility genes (genetic diseases), are also associated with viral infections (virally implicated... 
PROTEIN INTERACTION NETWORK | INTERACTION DATABASE | CELLS | RETINOBLASTOMA | GENE | PATHWAY | TYPE-16 E7 ONCOPROTEIN | BIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | HUMAN-PAPILLOMAVIRUS | EPSTEIN-BARR-VIRUS | Fanconi Anemia - virology | Genetic Predisposition to Disease | Human papillomavirus 16 - pathogenicity | Disease - genetics | Humans | Computational Biology | Virus Diseases - complications | Viral Proteins - metabolism | Human papillomavirus 16 - metabolism | Protein Interaction Maps | Disease - etiology | Host-Pathogen Interactions - genetics | Models, Biological | Fanconi Anemia - etiology | Fanconi Anemia - genetics | Herpesvirus 4, Human - pathogenicity | Herpesvirus 4, Human - metabolism | Host-Pathogen Interactions - physiology | Virus diseases | Plant diseases | Perturbation (Mathematics) | Host-parasite relationships | Physiological aspects | Development and progression | Research | Proteins | Health sciences | Human papillomavirus | Hypotheses | Medicare | Disease | Viruses | Genomes | Lymphomas | Grants | Family medical history | Viral infections
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2. Full Text HPV-related oropharynx cancer in the United Kingdom: An evolution in the understanding of disease etiology
by Schache, Andrew G and Powell, Ned G and Cuschieri, Kate S and Robinson, Max and Leary, Sam and Mehanna, Hisham and Rapozo, Davy and Long, Anna and Cubie, Heather and Junor, Elizabeth and Monaghan, Hannah and Harrington, Kevin J and Nutting, Christopher M and Schick, Ulrike and Lau, Andy S and Upile, Navdeep and Sheard, Jon and Brougham, Kath and West, Catharine M.L and Oguejiofor, Ken and Thomas, Steve and Ness, Andy R and Pring, Miranda and Thomas, Gareth J and King, Emma V and McCance, Dennis J and James, Jacqueline A and Moran, Michael and Sloan, Phil and Shaw, Richard J and Evans, Mererid and Jones, Terry M
Cancer Research, ISSN 0008-5472, 11/2016, Volume 76, Issue 22, pp. 6598 - 6606
A rising incidence of oropharyngeal squamous cell carcinoma (OPSCC) incidence has occurred throughout the developed world, where it has been attributed to an... 
POSITIVE TONSILLAR | NECK CANCERS | ONCOLOGY | SQUAMOUS-CELL CARCINOMA | POOLED ANALYSIS | RISK | HUMAN-PAPILLOMAVIRUS | PREVALENCE | VIRAL-INDUCED CARCINOMA | EPIDEMIOLOGY | INTERNATIONAL HEAD | Humans | Oropharyngeal Neoplasms - etiology | Female | Male | Papillomavirus Infections - virology | United Kingdom | Oropharyngeal Neoplasms - virology | Papillomaviridae - genetics
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3. Full Text Disease etiology and diagnosis by TCR repertoire analysis goes viral
by Attaf, Meriem and Sewell, Andrew K
European Journal of Immunology, ISSN 0014-2980, 11/2016, Volume 46, Issue 11, pp. 2516 - 2519
The importance of T‐cell receptor (TCR) repertoire diversity is highlighted in murine models of immunodeficiency and in many human pathologies. However, the... 
Autoimmunity | Virus infection | High‐throughput sequencing | TCR repertoire | High-throughput sequencing | IMMUNOLOGY | CYTOMEGALOVIRUS | CD8(+) T-CELLS | MONOZYGOTIC TWINS | RESPONSES | CMV REACTIVATION | MULTIPLE-SCLEROSIS | CROSS-REACTIVITY | EBV | STEM-CELL TRANSPLANTATION | RECEPTOR REPERTOIRE | Animals | T-Lymphocytes | Humans | Multiple Sclerosis - immunology | Mice | Receptors, Antigen, T-Cell - genetics | Receptors, Antigen, T-Cell, alpha-beta - genetics | Multiple sclerosis | Analysis | Development and progression | Diagnosis | T cells | Health aspects
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4. Full Text Transcriptome-wide analysis of wild Asari (=Manila) clams affected by the Brown Muscle Disease: Etiology and impacts of the disease
by Pierron, F and Gonzalez, P and Bertucci, A and Binias, C and Mérour, E and Brémont, M and de Montaudouin, X
Fish and Shellfish Immunology, ISSN 1050-4648, 03/2019, Volume 86, pp. 179 - 185
Recently, we reported an emerging pathology named Brown Muscle Disease (BMD) affecting Asari clams inhabiting the most productive area for this species in... 
Neurotoxicity | RNA-Seq | Brown Muscle Disease | Ruditapes phillippinarum | PARASITES | ARCACHON BAY | CORBICULA-FLUMINEA | TIME | IMMUNOLOGY | MORTALITIES | FISHERIES | ANNOTATION | MARINE & FRESHWATER BIOLOGY | GENE-EXPRESSION | VETERINARY SCIENCES | RUDITAPES-PHILIPPINARUM | VIRUSES | Ruditapes phillippinarurn | Virus diseases | RNA sequencing | Medical research | Disease transmission | RNA | Analysis | Medicine, Experimental | Development and progression | Genetic transcription | Health aspects | Causes and theories of causation | Diseases | Life Sciences | Biochemistry, Molecular Biology
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5. Full Text Honing in on disease etiology
by Okeke, Iruka N
African journal of laboratory medicine, ISSN 2225-2002, 2017, Volume 6, Issue 1, pp. 679 - e2
In one example of how diagnostic test development and deployment can overcome health worker shortages, Kaindjee-Tjituka et al.2 found that introduction of... 
Ebola virus | Leprosy | Disease | Laboratories | Patients | Diagnostic tests | laboratory medicine, diagnostic laboratories | surveillance, infectious diseases | Africa
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6. Full Text Low levels of antibodies against common viruses associate with anti-citrullinated protein antibody-positive rheumatoid arthritis; implications for disease aetiology
by Sherina, Natalia and Hreggvidsdottir, Hulda S and Bengtsson, Camilla and Hansson, Monika and Israelsson, Lena and Alfredsson, Lars and Lundberg, Karin
Arthritis Research and Therapy, ISSN 1478-6354, 09/2017, Volume 19, Issue 1, pp. 219 - 9
Background: Infection by common viruses has long been discussed in the aetiology of a number of autoimmune diseases, including rheumatoid arthritis (RA).... 
Rheumatoid arthritis (RA) | Infections | Autoantibodies | Anti-CCP | CELLS | SYNOVIAL TISSUE | BONE-MARROW | RISK | NUCLEAR ANTIGEN-1 | RHEUMATOLOGY | HUMAN PARVOVIRUS B19 | EPITOPE | AUTOIMMUNE CHRONIC ARTHRITIS | INFECTION | EPSTEIN-BARR-VIRUS | Humans | Middle Aged | Adult | Antibodies, Viral - immunology | Female | Male | Aged | Arthritis, Rheumatoid - immunology | Antibodies, Viral - blood | Anti-Citrullinated Protein Antibodies - immunology | Arthritis, Rheumatoid - virology | Case-Control Studies | Care and treatment | Usage | Rheumatoid arthritis | Environmental aspects | Epstein-Barr virus | Genetic aspects | Risk factors | Studies | Viruses | Health risk assessment | Viral infections
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7. Full Text The impact of liver disease aetiology and the stages of hepatic fibrosis on the performance of non‐invasive fibrosis biomarkers: an international study of 2411 cases
by Sebastiani, G and Castera, L and Halfon, P and Pol, S and Mangia, A and Di Marco, V and Pirisi, M and Voiculescu, M and Bourliere, M and Alberti, A
Alimentary Pharmacology & Therapeutics, ISSN 0269-2813, 11/2011, Volume 34, Issue 10, pp. 1202 - 1216
Aliment Pharmacol Ther 2011; 34: 1202–1216 Summary Background  Performance of non‐invasive fibrosis biomarkers may be influenced by aetiology of chronic liver... 
TRANSIENT ELASTOGRAPHY | DIAGNOSTIC EVALUATION | BIOCHEMICAL MARKERS | STANDARD LABORATORY TESTS | ASPARTATE-AMINOTRANSFERASE | FIBROTEST-ACTITEST | PHARMACOLOGY & PHARMACY | INFECTED PATIENTS | PREDICTING CIRRHOSIS | GASTROENTEROLOGY & HEPATOLOGY | PLATELET RATIO INDEX | OPERATING CHARACTERISTIC CURVES | Severity of Illness Index | Liver Cirrhosis - etiology | Liver Cirrhosis - diagnosis | Reproducibility of Results | Area Under Curve | Fatty Liver - pathology | Europe | Humans | Middle Aged | Fatty Liver - complications | Hepatitis B - pathology | Male | Biomarkers - blood | Hepatitis B - complications | HIV Infections - pathology | Biopsy | HIV Infections - complications | Adult | Female | Hepatitis C - complications | Retrospective Studies | Hepatitis C - pathology | Chronic Disease | Cohort Studies | Liver diseases | HIV (Viruses) | Hepatitis C virus | Biological markers | Lung diseases | Fibrosis
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8. Full Text Case-control study of diarrheal disease etiology in a remote rural area in western Thailand
by Bodhidatta, Ladaporn and McDaniel, Philip and Sornsakrin, Siriporn and Srijan, Apichai and Serichantalergs, Oralak and Mason, Carl J
American Journal of Tropical Medicine and Hygiene, ISSN 0002-9637, 11/2010, Volume 83, Issue 5, pp. 1106 - 1109
The objective was to assess the association of enteric pathogens in diarrheal disease in a remote rural area in Thailand Stool specimens were collected from... 
MAGNITUDE | PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH | COLI | GLOBAL PROBLEM | ANTIBIOTIC-RESISTANCE | PATTERNS | RISK | TROPICAL MEDICINE | CHILDREN | PATHOGENS | Virus Diseases - epidemiology | Age Distribution | Prevalence | Humans | Thailand - epidemiology | Giardiasis - epidemiology | Child, Preschool | Diarrhea - epidemiology | Infant | Male | Virus Diseases - virology | Giardiasis - parasitology | Diarrhea - parasitology | Case-Control Studies | Feces - microbiology | Diarrhea - microbiology | Rural Population | Bacterial Infections - epidemiology | Female | Bacterial Infections - microbiology
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9. Full Text Second European evidence-based consensus on the prevention, diagnosis and management of opportunistic infections in inflammatory bowel disease
by Rahier, J.F and Magro, F and Abreu, C and Armuzzi, A and Ben-Horin, S and Chowers, Y and Cottone, M and de Ridder, L and Doherty, G and Ehehalt, R and Esteve, M and Katsanos, K and Lees, C.W and MacMahon, E and Moreels, T and Reinisch, W and Tilg, H and Tremblay, L and Veereman-Wauters, G and Viget, N and Yazdanpanah, Y and Eliakim, R and Colombel, J.F and ECCO and European Crohn's and Colitis Organisation (ECCO)
Journal of Crohn's and Colitis, ISSN 1873-9946, 06/2014, Volume 8, Issue 6, pp. 443 - 468
Inflammatory bowel disease | ECCO guidelines | Opportunistic infections | GASTROENTEROLOGY & HEPATOLOGY | HIV Infections - prevention & control | Hepatitis C - therapy | Age Factors | Herpesviridae Infections - etiology | Humans | Middle Aged | Opportunistic Infections - prevention & control | Opportunistic Infections - therapy | Papillomavirus Infections - diagnosis | Herpesviridae Infections - prevention & control | Papillomavirus Infections - therapy | Parasitic Diseases - etiology | Opportunistic Infections - etiology | Young Adult | Parasitic Diseases - therapy | HIV Infections - diagnosis | Mycoses - therapy | Adult | Influenza, Human - diagnosis | Papillomavirus Infections - etiology | Hepatitis C - prevention & control | Inflammatory Bowel Diseases - complications | Influenza, Human - therapy | Mycoses - prevention & control | Hepatitis B - therapy | Risk Factors | Parasitic Diseases - prevention & control | Herpesviridae Infections - diagnosis | Influenza, Human - etiology | Opportunistic Infections - diagnosis | Hepatitis B - diagnosis | Hepatitis B - etiology | Hepatitis C - diagnosis | HIV Infections - etiology | Herpesviridae Infections - therapy | Papillomavirus Infections - prevention & control | Adolescent | HIV Infections - therapy | Mycoses - diagnosis | Parasitic Diseases - diagnosis | Hepatitis B - prevention & control | Immunocompromised Host | Hepatitis C - etiology | Influenza, Human - prevention & control | Mycoses - etiology
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10. Full Text A detailed evaluation of acute respiratory decline in patients with fibrotic lung disease: Aetiology and outcomes
by HUIE, Tristan J and OLSON, Amy L and COSGROVE, Gregory P and JANSSEN, William J and LARA, Abigail R and LYNCH, David A and GROSHONG, Steve D and MOSS, Marc and SCHWARZ, Marvin I and BROWN, Kevin K and FRANKEL, Stephen K
Respirology, ISSN 1323-7799, 08/2010, Volume 15, Issue 6, pp. 909 - 917
ABSTRACT Background and objective:  A comprehensive diagnostic evaluation is recommended for all patients with fibrotic lung disease and acute respiratory... 
acute exacerbation | diffuse alveolar haemorrhage | fibrosis | diffuse alveolar damage | interstitial lung disease | HYPERSENSITIVITY PNEUMONITIS | BIOPSY | INTERSTITIAL PNEUMONIA | PATHOLOGICAL FINDINGS | CYTOMEGALOVIRUS | COMPUTED-TOMOGRAPHY | HERPES-SIMPLEX-VIRUS | RESPIRATORY SYSTEM | IDIOPATHIC PULMONARY-FIBROSIS | CRITICALLY-ILL PATIENTS | Pulmonary Fibrosis - diagnosis | Pulmonary Fibrosis - mortality | Pulmonary Fibrosis - microbiology | Lung Diseases, Interstitial - microbiology | Respiratory Insufficiency - mortality | Humans | Middle Aged | Respiratory Insufficiency - diagnosis | Respiratory Insufficiency - microbiology | Male | Lung Diseases, Interstitial - mortality | Lung Diseases, Interstitial - diagnosis | Survival Analysis | Aged, 80 and over | Female | Aged | Retrospective Studies | Heart failure | Pulmonary embolism | Care and treatment | Patient outcomes | Analysis
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11. Full Text Role of apoptosis in disease
by Favaloro, B and Allocati, N and Graziano, V and Di Ilio, C and De Laurenzi, V
Aging, ISSN 1945-4589, 2012, Volume 4, Issue 5, pp. 330 - 349
Since the initial description of apoptosis, a number of different forms of cell death have been described. In this review we will focus on classic... 
Aging | Caspases | Cell death | Apoptosis | Cancer | Diseases | HEPATITIS-B-VIRUS | cell death | ALZHEIMERS-DISEASE | apoptosis | diseases | AMYOTROPHIC-LATERAL-SCLEROSIS | CELL BIOLOGY | GERIATRICS & GERONTOLOGY | CELL LUNG-CANCER | ACUTE LYMPHOBLASTIC-LEUKEMIA | BREAST-CANCER PATIENTS | BCL2 PROMOTER POLYMORPHISM | cancer | ISCHEMIC BRAIN-INJURY | aging | caspases | NF-KAPPA-B | HUNTINGTONS-DISEASE | Disease - etiology | Heart Diseases - etiology | Animals | Caspases - metabolism | Neoplasms - etiology | Signal Transduction | Humans | Nervous System Diseases - etiology | Autoimmune Diseases - etiology | Communicable Diseases - etiology
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12. Full Text Oral complications of cancer and cancer therapy: From cancer treatment to survivorship
by Epstein, Joel B and Thariat, Juliette and Bensadoun, Rene-Jean and Barasch, Andrei and Murphy, Barbara A and Kolnick, Leanne and Popplewell, Leslie and Maghami, Ellie
CA Cancer Journal for Clinicians, ISSN 0007-9235, 11/2012, Volume 62, Issue 6, pp. 400 - 422
Oral complications resulting from cancer and cancer therapies cause acute and late toxicities that may be underreported, underrecognized, and undertreated.... 
head and neck neoplasms | mucositis | hematopoietic cell transplantation | radiation | hyposalivation | oral neoplasms | osteonecrosis | xerostomia | chemoradiation | chemotherapy | SUBMANDIBULAR SALIVARY-GLAND | VERSUS-HOST-DISEASE | PATIENT-REPORTED OUTCOMES | CLINICAL-PRACTICE GUIDELINES | MODULATED RADIATION-THERAPY | ONCOLOGY GROUP RTOG | NECK SYMPTOM SURVEY | ONCOLOGY | LOCALLY ADVANCED HEAD | QUALITY-OF-LIFE | STEM-CELL TRANSPLANTATION | Humans | Candidiasis, Oral - etiology | Oral Ulcer - etiology | Radiotherapy - adverse effects | Sialorrhea - therapy | Osteoradionecrosis - etiology | Dose-Response Relationship, Drug | Olfaction Disorders - therapy | Neoplasms, Second Primary | Osteoradionecrosis - therapy | Antineoplastic Agents - adverse effects | Tooth Demineralization - etiology | Sialorrhea - etiology | Taste Disorders - therapy | Facial Pain - etiology | Dental Caries - prevention & control | Severity of Illness Index | Trismus - etiology | Dental Caries - etiology | Risk Factors | Head and Neck Neoplasms - therapy | Neoplasm Recurrence, Local | Virus Diseases - therapy | Trismus - therapy | Stomatitis - etiology | Taste Disorders - etiology | Virus Diseases - etiology | Candidiasis, Oral - therapy | Periodontitis - etiology | Stomatitis - therapy | Oral Ulcer - therapy | Tooth Demineralization - prevention & control | Facial Pain - therapy | Quality of Life | Oral Health | Olfaction Disorders - etiology | Causes of | Complications and side effects | Mouth diseases | Care and treatment | Cancer | Surgical outcomes | Oncology | Chemotherapy | Toxicity | Cells
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