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Journal Article
Nucleic acids research, ISSN 1362-4962, 2015, Volume 43, Issue W1, pp. W30 - W38
The HMMER website, available at http://www.ebi.ac.uk/Tools/hmmer/, provides access to the protein homology search algorithms found in the HMMER software suite.... 
DATABASE | SEQUENCES | ENERGY CONTENT | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | PROTEIN DATA-BANK | ACID SUBSTITUTION MATRICES | HIDDEN MARKOV-MODELS | PREDICTION | Protein Structure, Tertiary | Sequence Homology, Amino Acid | Sequence Analysis, Protein | Markov Chains | Sequence Alignment | Algorithms | Databases, Protein | Software | Internet | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2018, Volume 46, Issue W1, pp. W200 - W204
Abstract The HMMER webserver [http://www.ebi.ac.uk/Tools/hmmer] is a free-to-use service which provides fast searches against widely used sequence databases... 
DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | FAMILY | Sequence Analysis, Protein | User-Computer Interface | Catalytic Domain | Markov Chains | Databases, Genetic | Software | Internet | Sequence Analysis | Web Server Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2015, Volume 43, Issue W1, pp. W389 - W394
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides... 
FOLD-RECOGNITION | PROFILES | DATABASE | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | 3-DIMENSIONAL STRUCTURES | ACCURACY | Software | Algorithms | Internet | Protein Structure, Secondary | Solvents - chemistry | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2016, Volume 44, Issue W1, pp. W83 - W89
.... Translation of hundreds of gene identifiers is another core feature of g:Profiler. Since its first publication in 2007, our web server has become a popular tool of choice among basic and translational researchers... 
VISUALIZATION | NETWORK | DATABASE | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | FRAMEWORK | ONTOLOGY | CLASSIFICATION | UNIFICATION | SOFTWARE | TOOL | User-Computer Interface | Vertebrates - genetics | Humans | Molecular Sequence Annotation | Gene Expression Regulation | Gene Expression Profiling | Transcription Factors - genetics | Insecta - genetics | Fungi - genetics | Transcription Factors - metabolism | Computer Graphics | Animals | Plants - genetics | Protein Binding | Internet | Binding Sites | Gene Ontology | Web Server issue
Journal Article
Bioinformatics, ISSN 1367-4803, 06/2014, Volume 30, Issue 12, pp. 1771 - 1773
... be modeled to obtain an understanding of their molecular basis. We present a user-friendly protein docking server, based on the rigidbody docking programs ZDOCK and M-ZDOCK, to predict structures of protein-protein complexes and symmetric multimers... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PERFORMANCE | CAPRI | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | ZRANK | WEB SERVER | Molecular Docking Simulation - methods | Multiprotein Complexes - chemistry | Software | Algorithms | Protein Multimerization | Applications Notes
Journal Article
Nucleic acids research, ISSN 1362-4962, 2018, Volume 46, Issue W1, pp. W95 - W101
.... We developed the dbCAN web server in 2012 to provide a public service for automated CAZyme annotation for newly sequenced genomes. Here, dbCAN2 (http://cys.bios.niu.edu/dbCAN2... 
CAZY | DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | MICROBIOTA | HEALTH | RESOURCE | Web Server Issue
Journal Article
2018, ISBN 9780300180817, 454
...: Who is in charge, the servant or the master?? Though classic servants like the butler or the governess have largely vanished, the Internet is filled with servers... 
Information technology-Social aspects | Web hosting | Information technology | Web servers
eBook
Nucleic acids research, ISSN 1362-4962, 2018, Volume 46, Issue W1, pp. W49 - W54
Abstract Plant regulatory small RNAs (sRNAs), which include most microRNAs (miRNAs) and a subset of small interfering RNAs (siRNAs), such as the phased siRNAs... 
MICRORNAS | BIOGENESIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PREDICTION | Web Server Issue
Journal Article
Journal of computational chemistry, ISSN 0192-8651, 2018, Volume 39, Issue 28, pp. 2409 - 2413
Journal Article
Nucleic acids research, ISSN 1362-4962, 2017, Volume 45, Issue W1, pp. W98 - W102
.... While certain existing web servers are valuable and widely used, many expression analysis functions needed by experimental biologists are still not adequately addressed by these tools... 
TARGET | CELLS | PROJECT | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROSTATE-CANCER | MARKERS | HUMANS | Multifactor Dimensionality Reduction | User-Computer Interface | Humans | Gene Expression Regulation, Neoplastic | Neoplasms - mortality | Data Mining | Gene Expression Profiling | Neoplasm Proteins - metabolism | Neoplasms - genetics | Survival Analysis | Internet | Neoplasm Proteins - genetics | Neoplasms - pathology | Web Server Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2015, Volume 43, Issue W1, pp. W425 - W430
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2016, Volume 44, Issue 1, pp. W70 - W76
.... Here we fill this gap by presenting the Genonets Server, a tool that provides the following features... 
EVOLVABILITY | EVOLUTION | MUTATIONAL ROBUSTNESS | SHAPES | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | PHENOTYPE | SYSTEMS | EPISTASIS | H3N2 | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2018, Volume 46, Issue W1, pp. W84 - W88
...s. While computational prediction methods are available to make up the shortfall, a majority of public web servers are hindered by practical limitations and poor performance... 
VISUALIZATION | PROTEIN | GENE ONTOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | TOOL | Web Server Issue
Journal Article