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Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2016, Volume 44, Issue W1, pp. W83 - W89
.... Translation of hundreds of gene identifiers is another core feature of g:Profiler. Since its first publication in 2007, our web server has become a popular tool of choice among basic and translational researchers... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | User-Computer Interface | Vertebrates - genetics | Humans | Molecular Sequence Annotation | Gene Expression Regulation | Gene Expression Profiling | Transcription Factors - genetics | Insecta - genetics | Fungi - genetics | Transcription Factors - metabolism | Computer Graphics | Animals | Plants - genetics | Protein Binding | Internet | Binding Sites | Gene Ontology | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2015, Volume 43, Issue W1, pp. W30 - W38
The HMMER website, available at http://www.ebi.ac.uk/Tools/hmmer/, provides access to the protein homology search algorithms found in the HMMER software suite.... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Protein Structure, Tertiary | Sequence Homology, Amino Acid | Sequence Analysis, Protein | Markov Chains | Sequence Alignment | Algorithms | Databases, Protein | Software | Internet | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2016, Volume 44, Issue W1, pp. W406 - W409
3Drefine is an interactive web server for consistent and computationally efficient protein structure refinement with the capability to perform web-based statistical and visual analysis... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Knowledge Bases | Datasets as Topic | Hydrogen Bonding | Models, Molecular | Protein Conformation | Software | Internet | Proteins - chemistry | Caspases - chemistry | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2015, Volume 43, Issue W1, pp. W389 - W394
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Software | Algorithms | Internet | Protein Structure, Secondary | Solvents - chemistry | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2019, Volume 47, Issue W1, pp. W191 - W198
Biological data analysis often deals with lists of genes arising from various studies. The g:Profiler toolset is widely used for finding biological categories... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Animals | Plants - genetics | Humans | Information Storage and Retrieval | Databases, Genetic | Software | Genome | Fungi - genetics | Parasites - genetics | Index Medicus | Web Server Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2017, Volume 45, Issue W1, pp. W229 - W235
.... The updated server has been extensively tested using a benchmark containing 2690 point mutations from 132 different protein structures... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Web Server Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2018, Volume 46, Issue W1, pp. W200 - W204
Abstract The HMMER webserver [http://www.ebi.ac.uk/Tools/hmmer] is a free-to-use service which provides fast searches against widely used sequence databases... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Analysis, Protein | User-Computer Interface | Catalytic Domain | Markov Chains | Databases, Genetic | Software | Internet | Sequence Analysis | Web Server Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2015, Volume 43, Issue W1, pp. W65 - W71
.... Although several web servers and stand-alone tools were developed to address this problem, all these tools, however, can only handle one type of samples... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Analysis, RNA - methods | Sequence Analysis, Protein - methods | Software | Internet | Machine Learning | Sequence Analysis, DNA - methods | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2015, Volume 43, Issue W1, pp. W78 - W84
Genome wide analysis of orthologous clusters is an important component of comparative genomics studies. Identifying the overlap among orthologous clusters can... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Analysis, Protein | Multigene Family | Animals | Genomics | Molecular Sequence Annotation | Software | Genome, Plant | Internet | Phylogeny | Cluster Analysis | Index Medicus | Web Server issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 07/2015, Volume 43, Issue W1, pp. W200 - W207
.... Here, we present FAF-Drugs3, a web server that can be used for drug discovery and chemical biology projects to help in preparing compound libraries and to assist decision-making during the hit... 
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Software | Internet | Pharmacokinetics | Drug Discovery | Pharmaceutical Preparations - chemistry | Index Medicus | Web Server issue
Journal Article