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1. Full Text Clonal reproduction in fungi
by John W. Taylor and Christopher Hann-Soden and Sara Branco and Iman Sylvain and Christopher E. Ellison
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 7/2015, Volume 112, Issue 29, pp. 8901 - 8908
Research over the past two decades shows that both recombination and clonality are likely to contribute to the reproduction of all fungi. This view of fungi is... 
Fungi | Clonality | Recombination | Reproduction | Population genomics | MATING-TYPE LOCUS | recombination | COCCIDIOIDES-IMMITIS | ARBUSCULAR MYCORRHIZAL FUNGI | MULTIDISCIPLINARY SCIENCES | population genomics | HISTOPLASMA-CAPSULATUM | PATHOGEN ASPERGILLUS-FUMIGATUS | YEAST CANDIDA-ALBICANS | SEXUAL REPRODUCTION | clonality | fungi | NEUROSPORA-TETRASPERMA | CRYPTOCOCCUS-NEOFORMANS | reproduction | MOLECULAR MARKERS REVEAL | Genetics, Population | Animals | Fungi - physiology | Humans | Recombination, Genetic - genetics | Genotype | Clone Cells | Mycorrhizae - physiology | Fungi - genetics | Genetic aspects | Genetic variation | Growth | Identification and classification | Biological Sciences | Clonal Reproduction | 129 | Papers | In the Light of Evolution IX | Alternatives to Sex Sackler
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2. Full Text Fungi with multifunctional lifestyles: endophytic insect pathogenic fungi
by Barelli, Larissa and Barelli, Larissa and Moonjely, Soumya and Moonjely, Soumya and Behie, Scott W and Behie, Scott W and Bidochka, Michael J and Bidochka, Michael J
Plant Molecular Biology, ISSN 0167-4412, 4/2016, Volume 90, Issue 6, pp. 657 - 664
This review examines the symbiotic, evolutionary, proteomic and genetic basis for a group of fungi that occupy a specialized niche as insect pathogens as well... 
Biochemistry, general | Symbiosis | Plant growth promotion | Secondary metabolite | Plant endophytes | Insect pathogenic fungi | Nitrogen | Plant health | Biocontrol | Life Sciences | Plant Pathology | Protease | Evolution | Plant Sciences | REGULATORY ANALYSIS | ARBUSCULAR MYCORRHIZAL FUNGI | BIOCHEMISTRY & MOLECULAR BIOLOGY | BEAUVERIA CORDYCEPS BASSIANA | PROTEASE PRODUCTION | PLANT SCIENCES | METARHIZIUM-ANISOPLIAE | MANDUCA-SEXTA CUTICLE | PLANT-PATHOGENS | ENTOMOPATHOGENIC FUNGUS | RHIZOSPHERE-COMPETENT | NITROGEN TRANSFER | Metarhizium - physiology | Plant Development | Beauveria - physiology | Plants - microbiology | Plant Roots - microbiology | Secondary Metabolism | Endophytes - physiology | Beauveria - pathogenicity | Plants - metabolism | Animals | Fungi - physiology | Fungi - pathogenicity | Metarhizium - pathogenicity | Insecta - microbiology | Evolutionary biology | Proteases | Biological control | Molds (Fungi) | Plants | Pests | Phylogeny | Photosynthesis | Plant metabolites | Fungi | Pathogens | Insects | Plant growth
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3. Full Text Hidden fungi, emergent properties: Endophytes and microbiomes
by Porras-Alfaro, Andrea and Bayman, Paul
Annual Review of Phytopathology, ISSN 0066-4286, 09/2011, Volume 49, Issue 1, pp. 291 - 315
Endophytes are microorganisms that live within plant tissues without causing symptoms of disease. They are important components of plant microbiomes.... 
Latent pathogen | Dark septate endophyte | Mycobiome | Systems biology | Mycorrhiza | Microbiome | systems biology | dark septate endophyte | mycorrhiza | PIRIFORMOSPORA-INDICA | ARBUSCULAR MYCORRHIZAL FUNGI | DARK SEPTATE ENDOPHYTES | microbiome | PLANT SCIENCES | CONDENSED TANNINS | mycobiome | SEQUENCE DATABASES | latent pathogen | PHIALOCEPHALA-FORTINII | ROOT-ASSOCIATED FUNGI | ERICOID MYCORRHIZAL | MUTUALISTIC SYMBIOSIS | THEOBROMA-CACAO | Biodegradation, Environmental | Pest Control, Biological | Insecta | Mycorrhizae - isolation & purification | Endophytes - genetics | Fungi - isolation & purification | Plants - microbiology | Mycorrhizae - physiology | Fungi - genetics | Systems Biology | Metagenome - physiology | Genetic Variation | Endophytes - physiology | Animals | Mycorrhizae - genetics | Climate Change | Fungi - physiology | Endophytes - isolation & purification
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4. Full Text Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
by Conrad L. Schoch and Keith A. Seifert and Sabine Huhndorf and Vincent Robert and John L. Spouge and C. André Levesque and Wen Chen and Fungal Barcoding Consortium and Fungal Barcoding Consortium and Fungal Barcoding Consortium Author List and Naturvetenskapliga fakulteten and Faculty of Sciences and Department of Biological and Environmental Sciences and Göteborgs universitet and Institutionen för biologi och miljövetenskap and Gothenburg University
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2012, Volume 109, Issue 16, pp. 6241 - 6246
Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory... 
Fungi | Polymerase chain reaction | Ascomycota | Biological taxonomies | Internal transcribed spacers | Bar codes | DNA | Mycology | Phylogenetics | Sequencing | Fungal biodiversity | DNA barcoding | INTRAGENOMIC VARIATION | PHYLUM | MULTIDISCIPLINARY SCIENCES | RPB1 SEQUENCES | INFERENCE | EVOLUTION | PHYLOGENETIC-RELATIONSHIPS | BASIDIOMYCETOUS YEASTS | SYSTEMATICS | fungal biodiversity | DIVERSITY | SUBUNIT | Reproducibility of Results | Cell Nucleus - genetics | DNA, Fungal - genetics | DNA, Ribosomal Spacer - genetics | Species Specificity | Fungi - classification | Polymerase Chain Reaction | Phylogeny | DNA Barcoding, Taxonomic - methods | Fungi - genetics | Physiological aspects | Genetic aspects | Ribosomes | Biological Sciences | Biologisk systematik | Microbiology | Microbiology in the medical area | Zoologi | Zoology | Mikrobiologi | Bioinformatik och systembiologi | Mikrobiologi inom det medicinska området | Bioinformatics and Systems Biology | Biological Systematics | Fungi ; barcoding ; ITS | rdna | sequence-analysis | arbuscular mycorrhizal fungi | intragenomic variation | rpb1 sequences | basidiomycetous yeasts | species recognition | subunit | phylogenetic-relationships | ectomycorrhizal fungi
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5. Full Text Mosaic genome of endobacteria in arbuscular mycorrhizal fungi
: Transkingdom gene transfer in an ancient mycoplasma-fungus association
by Gloria Torres-Cortés and Stefano Ghignone and Paola Bonfante and Arthur Schüßler
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2015, Volume 112, Issue 25, pp. 7785 - 7790
For more than 450 million years, arbuscular mycorrhizal fungi (AMF) have formed intimate, mutualistic symbioses with the vast majority of land plants and are... 
Intracellular symbiont | Mycoplasma | Arbuscular mycorrhizal fungi | Endobacteria | Horizontal gene transfer | endobacteria | BACTERIA | arbuscular mycorrhizal fungi | intracellular symbiont | MULTIDISCIPLINARY SCIENCES | VIRULENCE | horizontal gene transfer | MULTIPLE SEQUENCE ALIGNMENT | PROTEASES | EVOLUTION | RESISTANCE | MOLLICUTES | ENDOSYMBIONT | REVEALS | PATHOGENS | Molecular Sequence Data | Gene Transfer Techniques | Mosaicism | Genome, Bacterial | Bacteria - genetics | Mycorrhizae | Genetic aspects | Genetic transformation | Soil fungi | Biological Sciences
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6. Full Text High‐resolution community profiling of arbuscular mycorrhizal fungi
by Schlaeppi, Klaus and Bender, S. Franz and Mascher, Fabio and Russo, Giancarlo and Patrignani, Andrea and Camenzind, Tessa and Hempel, Stefan and Rillig, Matthias C and Heijden, Marcel G. A
New Phytologist, ISSN 0028-646X, 11/2016, Volume 212, Issue 3, pp. 780 - 791
Summary Community analyses of arbuscular mycorrhizal fungi (AMF) using ribosomal small subunit (SSU) or internal transcribed spacer (ITS) DNA sequences often... 
single molecule real‐time (SMRT) sequencing | arbuscular mycorrhizal fungi (AMF) | AMF community analyses | AMF inoculation | microbiome | Glomeromycota diversity | single molecule real-time (SMRT) sequencing | SPECIES LEVEL | BIODIVERSITY | GLOMEROMYCOTA | PHYLOTAXONOMY | ESTABLISHMENT | PLANT SCIENCES | SEQUENCING PLATFORM | VERY-LOW ENDEMISM | AGRICULTURAL SOILS | DIVERSITY | GLOBAL ASSESSMENT | DNA, Fungal - genetics | Glomeromycota - physiology | Soil Microbiology | Mycorrhizae - physiology | Operon - genetics | RNA, Ribosomal - genetics | Sequence Analysis, DNA | Fungi | Analysis
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7. Full Text Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
by Schlosser, Dietmar and Harms, Hauke and Wick, Lukas Y
Nature Reviews Microbiology, ISSN 1740-1526, 03/2011, Volume 9, Issue 3, pp. 177 - 192
Fungi possess the biochemical and ecological capacity to degrade environmental organic chemicals and to decrease the risk associated with metals, metalloids... 
DEGRADING FUNGUS | ARBUSCULAR MYCORRHIZAL SYMBIOSIS | EXTRACELLULAR FENTON CHEMISTRY | TRAMETES-VERSICOLOR | HYDROXYL RADICAL PRODUCTION | BASIDIOMYCETE PHANEROCHAETE-CHRYSOSPORIUM | POLYCYCLIC AROMATIC-HYDROCARBONS | FRESH-WATER ENVIRONMENTS | MICROBIOLOGY | MANGANESE PEROXIDASE | WHITE-ROT FUNGUS | Air Pollutants - metabolism | Biodegradation, Environmental | Soil Pollutants - metabolism | Water Pollutants, Chemical - metabolism | Hazardous Substances - metabolism | Fungi - metabolism | Fungi | Genetic aspects | Bioremediation | Research | Health aspects
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8. Full Text Reconstructing the early evolution of Fungi using a six-gene phylogeny
by James, Timothy Y and Kauff, Frank and Schoch, Conrad L and Matheny, P Brandon and Hofstetter, Valérie and Cox, Cymon J and Celio, Gail and Gueidan, Cécile and Fraker, Emily and Miadlikowska, Jolanta and Lumbsch, H Thorsten and Rauhut, Alexana and Reeb, Valérie and Arnold, A Elizabeth and Amtoft, Anja and Stajich, Jason E and Hosaka, Kentaro and Sung, Gi-Ho and Johnson, Desiree and O'Rourke, Ben and Crockett, Michael and Binder, Manfred and Curtis, Judd M and Slot, Jason C and Wang, Zheng and Wilson, Anew W and Schüssler, Arthur and Longcore, Joyce E and O'Donnell, Kerry and Mozley-Stanidge, Sharon and Porter, David and Letcher, Peter M and Powell, Martha J and Taylor, John W and White, Merlin M and Griffith, Gareth W and Davies, David R and Humber, Richard A and Morton, Joseph B and Sugiyama, Junta and Rossman, Amy Y and Rogers, Jack D and Pfister, Don H and Hewitt, David and Hansen, Karen and Hambleton, Sarah and Shoemaker, Robert A and Kohlmeyer, Jan and Volkmann-Kohlmeyer, Brigitte and Spotts, Robert A and Serdani, Maryna and Crous, Peo W and Hughes, Karen W and Matsuura, Kenji and Langer, Ewald and Langer, Gitta and Untereiner, Wendy A and Lücking, Robert and Büdel, Burkhard and Geiser, David M and Aptroot, Ané and Diederich, Paul and Schmitt, Imke and Schultz, Matthias and Yahr, Rebecca and Hibbett, David S and Lutzoni, François and McLaughlin, David J and Spatafora, Joseph W and Vilgalys, Rytas
Nature, ISSN 1476-4687, 2006, Volume 443, Issue 7113, pp. 818 - 822
The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids).... 
Fungi | Genes, Fungal | Phylogeny | Chytridiomycota | Microsporidia | Evolution, Molecular | LAND PLANTS | ANIMALS | MAXIMUM-LIKELIHOOD | GLOMEROMYCOTA | SEQUENCES | ARBUSCULAR MYCORRHIZAL FUNGI | MULTIDISCIPLINARY SCIENCES | TREE | CHYTRIDIOMYCOTA | MOLECULAR PHYLOGENY | MICROSPORIDIA | Chytridiomycota - classification | Microsporidia - classification | Fungi - classification | Microsporidia - genetics | Chytridiomycota - genetics | Fungi - genetics | Genes, Fungal - genetics | Genetics | Evolutionary biology | Taxonomy | chytridiomycota | arbuscular mycorrhizal fungi | molecular phylogeny | maximum-likelihood | tree | animals | sequences | microsporidia | glomeromycota | land plants
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