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1. Full Text Molecular basis of Rrn3-regulated RNA polymerase I initiation and cell growth
by Blattner, Claudia and Jennebach, Stefan and Herzog, Franz and Mayer, Andreas and Cheung, Alan C.M and Witte, Gregor and Lorenzen, Kristina and Hopfner, Karl-Peter and Heck, Albert J.R and Aebersold, Ruedi and Cramer, Patrick
Genes and Development, ISSN 0890-9369, 10/2011, Volume 25, Issue 19, pp. 2093 - 2105
Cell growth is regulated during RNA polymerase (Pol) I transcription initiation by the conserved factor Rrn3/TIF-IA in yeast/humans. Here we provide a... 
Gene class-specific RNA synthesis | Ribosome biogenesis | Promoter specificity | rRNA production | Gene transcription | gene class-specific RNA synthesis | X-RAY SOLUTION | FACTOR-TIF-IA | SMALL-ANGLE SCATTERING | TRANSCRIPTION FACTOR IIB | DEVELOPMENTAL BIOLOGY | PREINITIATION COMPLEX | SACCHAROMYCES-CEREVISIAE | promoter specificity | MASS-SPECTROMETRY | CELL BIOLOGY | STRUCTURAL BIOLOGY | BASAL TRANSCRIPTION | GENETICS & HEREDITY | ribosome biogenesis | Protein Structure, Tertiary | Amino Acid Sequence | Promoter Regions, Genetic | Cell Proliferation | Saccharomyces cerevisiae - genetics | Humans | Protein Multimerization | Models, Molecular | Molecular Sequence Data | Saccharomyces cerevisiae Proteins - genetics | Serine - metabolism | Saccharomyces cerevisiae - cytology | Saccharomyces cerevisiae - metabolism | Sequence Alignment | Pol1 Transcription Initiation Complex Proteins - genetics | Pol1 Transcription Initiation Complex Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Pol1 Transcription Initiation Complex Proteins - chemistry | Mutation | DNA Polymerase I - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Synthesis | Cell development (Biology) | RNA | Crystals | Research | Structure | RNA polymerases | Research Paper
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2. Full Text A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus
by Wong, Hua and Marie-Nelly, Hervé and Herbert, Sébastien and Carrivain, Pascal and Blanc, Hervé and Koszul, Romain and Fabre, Emmanuelle and Zimmer, Christophe
Current Biology, ISSN 0960-9822, 10/2012, Volume 22, Issue 20, pp. 1881 - 1890
Despite the absence of internal membranes, the nucleus of eukaryotic cells is spatially organized, with chromosomes and individual loci occupying dynamic, but... 
RECOMBINATION | RECURRENT CHROMOSOMAL TRANSLOCATIONS | BUDDING YEAST | MOBILITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | DNA-DAMAGE | COMPARTMENTALIZATION | CHROMATIN INTERACTIONS | SACCHAROMYCES-CEREVISIAE | PRINCIPLES | GENOME ORGANIZATION | CELL BIOLOGY | Chromosomes, Fungal | Nucleolus Organizer Region - physiology | Chromatin | Computational Biology - methods | Saccharomyces cerevisiae - physiology | Interphase | Saccharomyces cerevisiae - genetics | DNA Replication | Saccharomyces cerevisiae - ultrastructure | Cell Nucleus - ultrastructure | Sequence Analysis, DNA | Cell Nucleus - physiology | Cell Nucleus - genetics | Computer Simulation | Transcription, Genetic | Computer-generated environments | Computer simulation | Analysis | Foreign securities | Genes | Models | Gene expression | Cells | Computational Biology/methods | Saccharomyces cerevisiae/genetics | Saccharomyces cerevisiae/physiology | Saccharomyces cerevisiae/ultrastructure | Life Sciences | Cell Nucleus/genetics | Genetics | Nucleolus Organizer Region/physiology | Cell Nucleus/ultrastructure | Cell Nucleus/physiology
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3. Full Text Purification and characterisation of the yeast plasma membrane ATP binding cassette transporter Pdr11p
by Laub, Katrine Rude and Marek, Magdalena and Stanchev, Lyubomir Dimitrov and Herrera, Sara Abad and Kanashova, Tamara and Bourmaud, Adèle and Dittmar, Gunnar and Pomorski, Thomas Günther
PLoS ONE, ISSN 1932-6203, 09/2017, Volume 12, Issue 9, p. e0184236
The ATP binding cassette (ABC) transporters Pdr11p and its paralog Aus1p are expressed under anaerobic growth conditions at the plasma membrane of the yeast... 
CELLS | CHOLESTEROL | MULTIDISCIPLINARY SCIENCES | HYDROLYSIS | NUCLEOTIDE-BINDING | ABC TRANSPORTERS | MULTIDRUG-RESISTANCE | PROTEINS | STEROL UPTAKE | P-GLYCOPROTEIN | LIPIDS | Gene Expression | Saccharomyces cerevisiae - genetics | Recombinant Proteins - chemistry | Saccharomyces cerevisiae Proteins - biosynthesis | Cell Membrane - genetics | Recombinant Proteins - genetics | Recombinant Proteins - biosynthesis | Saccharomyces cerevisiae Proteins - genetics | Vanadates - chemistry | Saccharomyces cerevisiae - chemistry | ATP-Binding Cassette Transporters - biosynthesis | ATP-Binding Cassette Transporters - isolation & purification | Cell Membrane - chemistry | Recombinant Proteins - isolation & purification | Saccharomyces cerevisiae - metabolism | ATP-Binding Cassette Transporters - chemistry | Liposomes - chemistry | ATP-Binding Cassette Transporters - genetics | Protein Domains | Saccharomyces cerevisiae Proteins - isolation & purification | Cell Membrane - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Genetic aspects | Cell membranes | Research | Carrier proteins | Adenosine triphosphatase | Plasma | Yeast | Laboratories | Protein purification | Fluorescence | Lipids | Biochemistry | Genomes | Orthovanadate | Saccharomyces | pH effects | Proteins | Sterols | Physiology | ABC transporters | Phosphatidylserine | Binding | Growth conditions | Purification | Methionine | Anaerobic conditions | Cholesterol | Environmental science | Mutagenesis | Lysine | Green fluorescent protein | Scientific imaging | Liposomes | ATP | Mass spectrometry | Saccharomyces cerevisiae | Transporter
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4. Full Text Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast
by van Werven, Folkert J and Neuert, Gregor and Hendrick, Natalie and Lardenois, Aurélie and Buratowski, Stephen and van Oudenaarden, Alexander and Primig, Michael and Amon, Angelika
Cell, ISSN 0092-8674, 09/2012, Volume 150, Issue 6, pp. 1170 - 1181
The cell-fate decision leading to gametogenesis is essential for sexual reproduction. In , only diploid /α but not haploid or α cells undergo gametogenesis,... 
METHYLATION | MESSENGER-RNA | REPRESSION | BIOCHEMISTRY & MOLECULAR BIOLOGY | MEIOSIS | ZINC-FINGER PROTEIN | GENE-EXPRESSION | INTERGENIC TRANSCRIPTION | POLYMERASE-II | SPORULATION | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | Gene Expression Regulation, Fungal | Promoter Regions, Genetic | Saccharomyces cerevisiae - physiology | Gametogenesis | Saccharomyces cerevisiae - genetics | RNA, Long Noncoding - genetics | Saccharomyces cerevisiae Proteins - genetics | Transcription Factors - genetics | Saccharomyces cerevisiae - cytology | Spores, Fungal | Saccharomyces cerevisiae Proteins - metabolism | Transcription, Genetic | Genes, Mating Type, Fungal | RNA, Fungal - genetics | Nuclear Proteins - genetics | Repressor Proteins - metabolism | Chromatin | Methyltransferases | Oncology, Experimental | Histones | Research | Genetic transcription | Cancer | RNA, Long Untranslated | Repressor Proteins | Cellular Biology | Nuclear Proteins | Life Sciences | Saccharomyces cerevisiae Proteins | RNA, Fungal | Transcription Factors | Saccharomyces cerevisiae
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5. Full Text The Vam6 GEF Controls TORC1 by Activating the EGO Complex
by Binda, Matteo and Péli-Gulli, Marie-Pierre and Bonfils, Grégory and Panchaud, Nicolas and Urban, Jörg and Sturgill, Thomas W and Loewith, Robbie and De Virgilio, Claudio
Molecular Cell, ISSN 1097-2765, 2009, Volume 35, Issue 5, pp. 563 - 573
The target of rapamycin complex 1 (TORC1) is a central regulator of eukaryotic cell growth that is activated by a variety of hormones (e.g., insulin) and... 
CELLBIO | PROTEINS | SIGNALING | YEAST SACCHAROMYCES-CEREVISIAE | CELL-GROWTH CONTROL | SIGNALING PATHWAYS | FUNCTIONAL HOMOLOG | RAG GTPASES | VACUOLE FUSION | BIOCHEMISTRY & MOLECULAR BIOLOGY | AMINO-ACID PERMEASE | COMPONENT | GTP-BINDING PROTEINS | GAP1 PERMEASE | CELL BIOLOGY | Vacuoles - enzymology | Intracellular Membranes - enzymology | Saccharomyces cerevisiae - genetics | Multiprotein Complexes | Adaptor Proteins, Vesicular Transport - genetics | Saccharomyces cerevisiae - drug effects | Guanosine Triphosphate - metabolism | Adaptor Proteins, Vesicular Transport - metabolism | Vacuoles - drug effects | DNA-Binding Proteins - metabolism | Amino Acids - metabolism | Time Factors | Guanine Nucleotide Exchange Factors - metabolism | Protein-Serine-Threonine Kinases - antagonists & inhibitors | Guanosine Diphosphate - metabolism | Protein Synthesis Inhibitors - pharmacology | Protein-Serine-Threonine Kinases - metabolism | Guanine Nucleotide Exchange Factors - genetics | Signal Transduction | Saccharomyces cerevisiae Proteins - antagonists & inhibitors | Monomeric GTP-Binding Proteins - genetics | Saccharomyces cerevisiae Proteins - genetics | Amino Acid Transport Systems - metabolism | Sirolimus - pharmacology | Cycloheximide - pharmacology | Protein Transport | Transcription Factors - metabolism | Monomeric GTP-Binding Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Saccharomyces cerevisiae - enzymology | Endosomes - enzymology | Intracellular Membranes - drug effects | Mutation | Saccharomyces cerevisiae - growth & development | Proteins | Purines | Amino acids | Gross domestic product | Guanosine
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6. Full Text Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 Ã… Resolution
by Karim-Jean Armache and Joseph D. Garlick and Daniele Canzio and Geeta J. Narlikar and Robert E. Kingston and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Science, ISSN 0036-8075, 11/2011, Volume 334, Issue 6058, pp. 977 - 982
Gene silencing is essential for regulating cell fate in eukaryotes. Altered chromatin architectures contribute to maintaining the silenced state in a variety... 
Proteins | Yeasts | Chromatin | Hydrogen bonds | REPORTS | Histones | Nucleosomes | Genetic loci | Methylation | Genetic mutation | Genetic screening | Histones - chemistry | Nucleosomes - chemistry | Saccharomyces cerevisiae - genetics | Protein Multimerization | Molecular Sequence Data | Crystallography, X-Ray | Silent Information Regulator Proteins, Saccharomyces cerevisiae - genetics | Saccharomyces cerevisiae - metabolism | Chemical Phenomena | Protein Interaction Domains and Motifs | Acetylation | Nucleosomes - ultrastructure | Binding Sites | Protein Structure, Tertiary | Amino Acid Sequence | Silent Information Regulator Proteins, Saccharomyces cerevisiae - chemistry | Silent Information Regulator Proteins, Saccharomyces cerevisiae - metabolism | Gene Silencing | Models, Molecular | Nucleosomes - metabolism | Mutant Proteins - metabolism | Static Electricity | Protein Folding | Saccharomyces cerevisiae - chemistry | Hydrogen Bonding | Mutagenesis | Mutant Proteins - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Histones - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Physiological aspects | Gene silencing | Research | Eukaryotes | Yeast | Mutation | Cells | Crystal structure | MATING | NUCLEOSOMES | CHROMATIN | BASIC BIOLOGICAL SCIENCES | RESOLUTION | SACCHAROMYCES CEREVISIAE | CRYSTAL STRUCTURE | 60 APPLIED LIFE SCIENCES | MODIFICATIONS | GENETICS | GENES | YEASTS | MUTATIONS | PROTEINS
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7. Full Text Recruitment and allosteric stimulation of a histone-deubiquitinating enzyme during heterochromatin assembly
by Zukowski, Alexis and Al-Afaleq, Nouf Omar and Duncan, Emily D and Yao, Tingting and Johnson, Aaron M
Journal of Biological Chemistry, ISSN 0021-9258, 2018, Volume 293, Issue 7, pp. 2498 - 2509
Heterochromatin formation in budding yeast is regulated by the silent information regulator (SIR) complex. The SIR complex comprises the NAD-dependent... 
NUCLEOSOME CORE | H2B UBIQUITYLATION | PROTEIN | STRUCTURAL BASIS | BUDDING YEAST | BIOCHEMISTRY & MOLECULAR BIOLOGY | TELOMERIC HETEROCHROMATIN | GENE-EXPRESSION | CELL-GROWTH | SACCHAROMYCES-CEREVISIAE | YEAST SILENT CHROMATIN | Saccharomyces cerevisiae - genetics | Allosteric Regulation | Silent Information Regulator Proteins, Saccharomyces cerevisiae - genetics | Sirtuin 2 - metabolism | Saccharomyces cerevisiae - metabolism | Heterochromatin - metabolism | Ubiquitin Thiolesterase - metabolism | Telomere - metabolism | Nuclear Proteins - genetics | Sirtuin 2 - chemistry | Telomere - genetics | Gene Expression Regulation, Fungal | Silent Information Regulator Proteins, Saccharomyces cerevisiae - chemistry | Silent Information Regulator Proteins, Saccharomyces cerevisiae - metabolism | Nucleosomes - metabolism | Nuclear Proteins - metabolism | Nucleosomes - genetics | Saccharomyces cerevisiae Proteins - genetics | Nuclear Proteins - chemistry | Ubiquitin Thiolesterase - genetics | Saccharomyces cerevisiae - chemistry | Sirtuin 2 - genetics | Heterochromatin - genetics | Histones - genetics | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Saccharomyces cerevisiae - enzymology | Histones - metabolism | Ubiquitin Thiolesterase - chemistry | Saccharomyces cerevisiae Proteins - chemistry | Gene Regulation | deubiquitylation (deubiquitination) | SIR complex | sirtuin | ubiquitination | histone | chromatin | epigenetics | yeast | heterochromatin
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8. Full Text High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
by Haiyuan Yu and Pascal Braun and Muhammed A. Yildirim and Irma Lemmens and Kavitha Venkatesan and Julie Sahalie and Tomoko Hirozane-Kishikawa and Fana Gebreab and Na Li and Nicolas Simonis and Tong Hao and Jean-François Rual and Amélie Dricot and Alexei Vazquez and Ryan R. Murray and Christophe Simon and Leah Tardivo and Stanley Tam and Nenad Svrzikapa and Changyu Fan and Anne-Sophie de Smet and Adriana Motyl and Michael E. Hudson and Juyong Park and Xiaofeng Xin and Michael E. Cusick and Troy Moore and Charlie Boone and Michael Snyder and Frederick P. Roth and Albert-László Barabási and Jan Tavernier and David E. Hill and Marc Vidal
Science, ISSN 0036-8075, 10/2008, Volume 322, Issue 5898, pp. 104 - 110
Current yeast interactome network maps contain several hundred molecular complexes with limited and somewhat controversial representation of direct binary... 
Datasets | Yeasts | Screening tests | Drug interactions | Molecular interactions | Principal components analysis | Connectivity | Reports | Open reading frames | Grants | Protein interaction mapping | 2-HYBRID SCREENS | REGULATORY NETWORKS | ANNOTATION | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | COMPLEXES | GENOMIC ANALYSIS | C-ELEGANS | SCALE | SACCHAROMYCES-CEREVISIAE | MASS-SPECTROMETRY | Signal Transduction | Saccharomyces cerevisiae - genetics | Computational Biology | Saccharomyces cerevisiae Proteins - genetics | Gene Regulatory Networks | Protein Interaction Mapping - standards | Saccharomyces cerevisiae - metabolism | Transcription Factors - metabolism | Protein Interaction Mapping - methods | Two-Hybrid System Techniques | Metabolic Networks and Pathways | Mass Spectrometry | Proteomics | Saccharomyces cerevisiae Proteins - metabolism | Protein Array Analysis | Protein Binding | Saccharomyces cerevisiae Proteins - isolation & purification | Proteome - metabolism | Physiological aspects | Genetic aspects | Research | Yeast fungi | Protein-protein interactions | Data analysis | Yeast | Cellular biology | Molecular biology | Spectrum analysis
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9. Full Text The molecular architecture of the nuclear pore complex
by Alber, Frank and Dokudovskaya, Svetlana and Veenhoff, Liesbeth M and Zhang, Wenzhu and Kipper, Julia and Devos, Damien and Suprapto, Adisetyantari and Karni-Schmidt, Orit and Williams, Rosemary and Chait, Brian T and Sali, Andrej and Rout, Michael P
Nature, ISSN 0028-0836, 11/2007, Volume 450, Issue 7170, pp. 695 - 701
Nuclear pore complexes (NPCs) are proteinaceous assemblies of approximately 50 MDa that selectively transport cargoes across the nuclear envelope. To determine... 
TERMINAL DOMAIN | IMPORTIN-BETA | MULTIDISCIPLINARY SCIENCES | FG-REPEAT DOMAINS | COMPONENTS | DYNAMICS | CRYOELECTRON TOMOGRAPHY | HOMOLOG | MEMBRANE-PROTEINS | NUCLEOCYTOPLASMIC TRANSPORT | NUCLEOPORINS | Saccharomyces cerevisiae Proteins - ultrastructure | Nuclear Pore Complex Proteins - metabolism | Nuclear Pore Complex Proteins - chemistry | Nuclear Pore Complex Proteins - ultrastructure | Cytoplasm - metabolism | Saccharomyces cerevisiae - ultrastructure | Nuclear Pore Complex Proteins - analysis | Nuclear Pore - metabolism | Saccharomyces cerevisiae - chemistry | Saccharomyces cerevisiae - cytology | Saccharomyces cerevisiae - metabolism | Nuclear Envelope - metabolism | Cell Nucleus - metabolism | Macromolecular Substances - chemistry | Nuclear Pore - ultrastructure | Saccharomyces cerevisiae Proteins - metabolism | Protein Conformation | Active Transport, Cell Nucleus | Nuclear Pore - chemistry | Saccharomyces cerevisiae Proteins - analysis | Binding Sites | Macromolecular Substances - metabolism | Evolution, Molecular | Saccharomyces cerevisiae Proteins - chemistry | Proteins | Cellular biology | Molecular structure | Molecular biology
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10. Full Text Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure
by Liu, Xiaoyu and Li, Meijing and Xia, Xian and Li, Xueming and Chen, Zhucheng
Nature, ISSN 0028-0836, 04/2017, Volume 544, Issue 7651, pp. 440 - 445
Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to... 
VISUALIZATION | COMPLEX | MULTIDISCIPLINARY SCIENCES | SWI/SNF | RESOLUTION | DNA TRANSLOCATION | ARCHITECTURE | ELECTRON-MICROSCOPY | CRYO-EM | NUCLEOSOME CORE PARTICLE | ISWI | Transcription Factors - chemistry | Histones - chemistry | Nucleosomes - chemistry | Saccharomyces cerevisiae - ultrastructure | Adenosine Triphosphatases - ultrastructure | Nucleosomes - ultrastructure | Binding Sites | Saccharomyces cerevisiae Proteins - ultrastructure | Amino Acid Sequence | Adenosine Triphosphatases - metabolism | Chromatin Assembly and Disassembly | Models, Molecular | Nucleosomes - metabolism | DNA - metabolism | Transcription Factors - ultrastructure | Saccharomyces cerevisiae - chemistry | Cryoelectron Microscopy | Transcription Factors - metabolism | DNA - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Saccharomyces cerevisiae - enzymology | Adenosine Triphosphatases - chemistry | Histones - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Enzymes | Chromatin | Flexibility | Deoxyribonucleic acid--DNA
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