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1. Full Text An analysis of species boundaries and biogeographic patterns in a cryptic species complex: The rotifer— Brachionus plicatilis
by Suatoni, Elizabeth and Vicario, Saverio and Rice, Sean and Snell, Terry and Caccone, Adalgisa
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 2006, Volume 41, Issue 1, pp. 86 - 98
Since the advent of molecular phylogenetics, there is increasing evidence that many small aquatic and marine invertebrates—once believed to be single,... 
Reproductive isolation | Brachionus | Cryptic species | ITS1 | COI | Rotifera | Zooplankton | STRAINS | PHYLOGENIES | BIOCHEMISTRY & MOLECULAR BIOLOGY | zooplankton | MOLECULAR EVOLUTION | EGG BANKS | BEHAVIORAL REPRODUCTIVE ISOLATION | MULLER,O.F | reproductive isolation | cryptic species | EVOLUTIONARY BIOLOGY | TEMPERATURE | SPECIATION | S-TYPE | GENETICS & HEREDITY | DIVERGENCE | Geography | Rotifera - genetics | Sexual Behavior, Animal | DNA, Ribosomal Spacer | Rotifera - physiology | Reproduction, Asexual | Molecular Sequence Data | Male | Electron Transport Complex IV - genetics | Phylogeny | Rotifera - anatomy & histology | Animals | Zygote | Bayes Theorem | Female | Ecology | Saline waters | Universities and colleges | Evolutionary biology
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2. Full Text Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy
by Mills, Scott and Alcántara-Rodríguez, J. Arturo and Ciros-Pérez, Jorge and Gómez, Africa and Hagiwara, Atsushi and Galindo, Kayla Hinson and Jersabek, Christian D and Malekzadeh-Viayeh, Reza and Leasi, Francesca and Lee, Jae-Seong and Mark Welch, David B and Papakostas, Spiros and Riss, Simone and Segers, Hendrik and Serra, Manuel and Shiel, Russell and Smolak, Radoslav and Snell, Terry W and Stelzer, Claus-Peter and Tang, Cuong Q and Wallace, Robert L and Fontaneto, Diego and Walsh, Elizabeth J
Hydrobiologia, ISSN 0018-8158, 07/2017, Volume 796, Issue 1, pp. 39 - 58
Understanding patterns and processes in biological diversity is a critical task given current and rapid environmental change. Such knowledge is even more... 
Phylogenetic comparative methods | Cryptic species | Evolution | ITS1 | Biodiversity | COI | Zooplankton | ECOLOGICAL GENETICS | RESOURCE COMPETITION | GENETIC DIFFERENTIATION | BEHAVIORAL REPRODUCTIVE ISOLATION | MORPHOLOGICAL STASIS | SIZE VARIATION | MARINE & FRESHWATER BIOLOGY | MICROSCOPIC ANIMALS | CRYPTIC SPECIATION | S-TYPE | DIVERSITY | Phylogeny | Genomics | DNA | Biological diversity | Taxonomy | Biological evolution | Body length | Genomes | Biological activity | Ecological effects | Taxa | Marine invertebrates | Phylogenetics | Rotifera | Species | Niches | Deoxyribonucleic acid--DNA | Aquaculture
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3. Full Text Marphysa (Eunicidae, polychaete, Annelida) species of the Sanguinea group from Australia, with comments on pseudo‐cryptic species
by Zanol, Joana and Silva, Thauane dos S. C and Hutchings, Pat
Invertebrate Biology, ISSN 1077-8306, 12/2016, Volume 135, Issue 4, pp. 328 - 344
The genus Marphysa is widely collected for bait by recreational fishermen in Australia, and yet the number of species remains unresolved. A new species is... 
new species | description | molecular taxonomy | pseudo‐cryptic species | bait worms | pseudo-cryptic species | PHYLOGENY | NEW-SOUTH-WALES | OWENIIDAE | MONTAGU | CHARACTERS | ZOOLOGY | FAUNA | MARINE & FRESHWATER BIOLOGY | Tide pool ecology | Fish
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4. Full Text Assessing species boundaries using Multilocus species delimitation in a morphologically conserved group of Neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae)
by Bagley, Justin C and Alda, Fernando and Breitman, M. Florencia and Bermingham, Eldredge and Van Den Berghe, Eric P and Johnson, Jerald B
PLoS ONE, ISSN 1932-6203, 04/2015, Volume 10, Issue 4, p. e0121139
Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve... 
HAPLOTYPE RECONSTRUCTION | COALESCENT | PHYLOGENY | DIVERSIFICATION | BIOGEOGRAPHY | COMPUTER-PROGRAM | MULTIDISCIPLINARY SCIENCES | TELEOSTEI | SYSTEMATICS | PISCES-POECILIIDAE | CRYPTIC DIVERSITY | Genetic Variation | Poecilia - classification | Animals | DNA, Mitochondrial - genetics | Poecilia - genetics | Phylogeography | Bayes Theorem | Fresh Water | Biodiversity | Evolution, Molecular | Genetic markers | Biological diversity conservation | Fishes | Analysis | Genomics | Radiation | Mitochondrial DNA | Phylogeny | Laboratories | Taxonomy | Zoology | Biological evolution | Biogeography | Hybridization | Fishing | Gene sequencing | Endangered & extinct species | Species diversity | Phylogenetics | Evolution | Freshwater fish | Deoxyribonucleic acid--DNA | Trees | Computer simulation | Systematic biology | Genetic diversity | Ecology | Nonparametric statistics | Biological diversity | Hypotheses | Plant diversity | Evolutionary biology | Morphology | Gene loci | Bayesian analysis | Methods | Deoxyribonucleic acid | DNA
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5. Full Text Cryptic diversity in a fig wasp community—morphologically differentiated species are sympatric but cryptic species are parapatric
by Darwell, C. T and Cook, J. M
Molecular Ecology, ISSN 0962-1083, 02/2017, Volume 26, Issue 3, pp. 937 - 950
A key debate in ecology centres on the relative importance of niche and neutral processes in determining patterns of community assembly with particular focus... 
beta diversity | alpha diversity | fig wasps | neutral theory | community assembly | cryptic species | niche theory | COMPLEX | BIOCHEMISTRY & MOLECULAR BIOLOGY | MUTUALISM | HOST | PATTERNS | DNA BARCODES | MITOCHONDRIAL-DNA | EVOLUTIONARY BIOLOGY | EVOLUTION | ECOLOGICAL NICHE MODELS | GEOGRAPHIC DISTRIBUTIONS | POLLINATING WASP | ECOLOGY | Analysis | Wasps | Biological diversity | Entomology | Morphology | Genetic diversity
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6. Full Text Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex
by Udayanga, Dhanushka and Castlebury, Lisa A and Rossman, Amy Y and Chukeatirote, Ekachai and Hyde, Kevin D
Fungal Diversity, ISSN 1560-2745, 7/2014, Volume 67, Issue 1, pp. 203 - 229
The genus Diaporthe comprises pathogenic, endophytic and saprobic species with both temperate and tropical distributions. Cryptic diversification, phenotypic... 
Medical Microbiology | DNA-lyase | Fungus Genetics | Molecular phylogeny | Microbiology | Epitypification | Phylogenetic informativeness | Generic type | Diaporthaceae | Biodiversity | Life Sciences | Microbial Ecology | Gene discordance | New primers | Speciation | PHOMOPSIS | MAXIMUM-LIKELIHOOD | RECOGNITION | SEQUENCE DATA | ENDOPHYTIC FUNGI | GENEALOGICAL CONCORDANCE | MULTILOCUS PHYLOGENY | CRYPTIC SPECIATION | MYCOLOGY | FUSARIUM-GRAMINEARUM | REPRODUCTIVE ISOLATION | Cladistic analysis | Muscle proteins | Tubulins | Analysis | Calmodulin | Resveratrol
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7. Full Text Use of the Genealogical Sorting Index (GSI) to delineate species boundaries in the Neofusicoccum parvum–Neofusicoccum ribis species complex
by Sakalidis, Monique L and Hardy, Giles E. St. J and Burgess, Treena I
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 09/2011, Volume 60, Issue 3, pp. 333 - 344
► First application of the Genealogical Sorting Index to identify fungal species. ► Description of new species; in the complex. ► Species from disturbed... 
Eucalyptus | Cryptic species | Latent pathogens | Phylogenetic species | Botryosphaeriaceae | Speciation | WESTERN-AUSTRALIA | BIOCHEMISTRY & MOLECULAR BIOLOGY | GRAPEVINE DECLINE | MULTIPLE GENE GENEALOGIES | LASIODIPLODIA-THEOBROMAE | BOTRYOSPHAERIA-DOTHIDEA | IDENTIFICATION | EVOLUTIONARY BIOLOGY | PATHOGENICITY | GENETICS & HEREDITY | SP-NOV | PRIMER SETS | DNA, Fungal - genetics | DNA, Ribosomal Spacer - genetics | Genetic Speciation | Ascomycota - genetics | Eucalyptus - microbiology | Phylogeny | Australia | Sequence Analysis, DNA | Ascomycota - classification
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8. Full Text Species Concepts as Applied to the Whitefly Bemisia tabaci Systematics：How Many Species Are There
by LIU Shu-sheng John Colvin Paul J De Barro
农业科学学报：英文版, ISSN 2095-3119, 2012, Volume 11, Issue 2, pp. 176 - 186
The worldwide distribution and extensive genetic diversity of the whitefly,Bemisia tabaci,has long been recognized.However,the levels of separation within... 
phylogenetic species | whitefly systematics | reproductive isolation | biological species | taxonomy | cryptic species | mating behavior | Mating behavior | Reproductive isolation | Biological species | Taxonomy | Cryptic species | Phylogenetic species | Whitefly systematics | HEMIPTERA | REPRODUCTIVE INCOMPATIBILITY | NON-B-BIOTYPE | DIFFERENT HOST PLANTS | VIRAL-INFECTION | GENETIC DIVERSITY | INDIGENOUS BIOTYPE | MATING INTERACTIONS | AGRICULTURE, MULTIDISCIPLINARY | INVASIVE BIOTYPES | INTERSPECIFIC HYBRIDIZATION
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9. Full Text Global species delimitation and phylogeography of the circumtropical ‘sexy shrimp’ Thor amboinensis reveals a cryptic species complex and secondary contact in the Indo‐West Pacific
by Titus, Benjamin M and Daly, Marymegan and Hamilton, Natalie and Berumen, Michael L and Baeza, J. Antonio
Journal of Biogeography, ISSN 0305-0270, 06/2018, Volume 45, Issue 6, pp. 1275 - 1287
Aim The “sexy shrimp” Thor amboinensis is currently considered a single circumtropical species. However, the tropical oceans are partitioned by hard and soft... 
gene flow | allopatric speciation | crustacean | introgression | coral reefs | cryptic species | DE-MAN | OCEAN | ISLANDS | PLANET | SOFTWARE | DISPERSAL | ORIGIN | GEOGRAPHY, PHYSICAL | INVERTEBRATE | FISHES | ECOLOGY | DIVERGENCE | Coral reefs and islands | Analysis | Phylogeny | Coral reefs | Reconstruction | Paleoceanography | Divergence | Oceans | Genetic structure | Discordance | Mitochondrial DNA | Dispersion | Gene flow | Mitochondria | Null hypothesis | Dispersal | Phylogenetics | Cyclones | Species | Speciation | Phosphopyruvate hydratase
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10. Full Text Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex
by Hagen, Ferry and Khayhan, Kantarawee and Theelen, Bart and Kolecka, Anna and Polacheck, Itzhack and Sionov, Edward and Falk, Rama and Parnmen, Sittiporn and Lumbsch, H. Thorsten and Boekhout, Teun
Fungal Genetics and Biology, ISSN 1087-1845, 05/2015, Volume 78, pp. 16 - 48
Phylogenetic analysis of 11 genetic loci and results from many genotyping studies revealed significant genetic diversity with the pathogenic / species complex.... 
Cryptococcus gattii | Cryptic species | Yeast | Cryptococcus neoformans | Pathogen | Taxonomy | MOLECULAR TYPE-VGII | END-POINT DISTRIBUTIONS | HIV-ASSOCIATED CRYPTOCOCCOSIS | EPIDEMIOLOGIC CUTOFF VALUES | POLYMERASE-CHAIN-REACTION | FLIGHT MASS-SPECTROMETRY | DESORPTION IONIZATION-TIME | GENETICS & HEREDITY | AMPLIFIED POLYMORPHIC DNA | VAR. GRUBII SEROTYPE | MYCOLOGY | ANTIFUNGAL DRUG SUSCEPTIBILITY | Genetic Variation | Cryptococcus neoformans - classification | Cryptococcus neoformans - genetics | Cryptococcus neoformans - chemistry | Genotype | Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | Molecular Typing | Mycological Typing Techniques
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