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dn/ds (118) 118
index medicus (97) 97
genetics & heredity (95) 95
evolutionary biology (86) 86
evolution, molecular (79) 79
evolution (64) 64
phylogeny (61) 61
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positive selection (54) 54
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detecting positive selection (9) 9
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molecular biology (9) 9
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sequence analysis, dna (9) 9
biotechnology & applied microbiology (8) 8
codon-substitution models (8) 8
drosophila (8) 8
gene (8) 8
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natural sciences (8) 8
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alignment (7) 7
animal genetics and genomics (7) 7
biological sciences (7) 7
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proteins - genetics (7) 7
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alleles (6) 6
base sequence (6) 6
bayes theorem (6) 6
cichlids - genetics (6) 6
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11/2012
Neotropical cichlid fishes are highly diverse and occupy diverse environments. Visual pigment evolution has been important in the diversification of African... 
dN/dS | Rhodopsin | Neotropical | Vision | 0329 | Cichlid
Dissertation
Genomics, ISSN 0888-7543, 08/2019
NKX-2.5 gene is responsible for cardiac development and its targeted disruption apprehends cardiac development at the linear heart tube stage. Bioinformatic... 
Journal Article
Plant Breeding and Biotechnology, ISSN 2287-9358, 2019, Volume 7, Issue 1, pp. 24 - 33
Sesame (Sesamum indicum L.) is the queen of oil seed crops and is cultivated widely in tropical and subtropical areas. The availability of the sesame genome... 
Evolution | Orthologs | Resequencing | DN/dS | Sesame
Journal Article
Plant breeding and biotechnology, ISSN 2287-9358, 2019, Volume 7, Issue 1, p. 24
Sesame (Sesamum indicum L.) is the queen of oil seed crops and is cultivated widely in tropical and subtropical areas. The availability of the sesame genome... 
dN/dS | Resequencing | Orthologs | Evolution | Sesame
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 10/2014, Volume 1167, pp. 75 - 85
Journal Article
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, ISSN 0962-8452, 04/2019, Volume 286, Issue 1901, p. 20190111
Heritable symbioses have been critical for the evolution of life. The genetic consequences of evolving a heritable symbiosis from the perspective of the... 
CONFLICT | PROTEIN | RESILIENCE | GENE-EXPRESSION PROFILES | transcriptomes | CLIMATE-CHANGE | Scleractinia | molecular evolution | PHYLOGENETIC TREES | intracellular symbiosis | dN/dS | EVOLUTIONARY BIOLOGY | PROBABILITY | BIOLOGY | ECOLOGY | ANTHOZOA | IMPACTS | GENOMIC BASIS
Journal Article
by Zhao, SL and Zhang, T and Liu, Q and Wu, H and Su, B and Shi, P and Chen, H
MOLECULAR BIOLOGY AND EVOLUTION, ISSN 0737-4038, 06/2019, Volume 36, Issue 6, pp. 1302 - 1315
We present a method that jointly analyzes the polymorphism and divergence sites in genomic sequences of multiple species to identify the genes under natural... 
MK test | ADAPTIVE PROTEIN EVOLUTION | NUCLEOTIDE SUBSTITUTION | BIOCHEMISTRY & MOLECULAR BIOLOGY | Bayesian | HUMANS | adaptive evolution | LOCUS | dN/dS ratio | EVOLUTIONARY BIOLOGY | GENES | ADAPTATION | GENETICS & HEREDITY | DETECTING POSITIVE SELECTION | positive selection | Poisson random field | LIKELIHOOD | RAPID EVOLUTION
Journal Article
JOURNAL OF VIROLOGY, ISSN 0022-538X, 03/2019, Volume 93, Issue 5
Hepatitis B virus (HBV) and its hepadnavirus relatives infect a wide range of vertebrates, from fish to human. Hepadnaviruses and their hosts have a long... 
HEPATITIS-B-VIRUS | ENTRY INHIBITORS | BRANCH-SITE | PHYLOGENETIC ANALYSIS | MOLECULAR DETERMINANTS | evolution | AMINO-ACID SITES | RESTRICTION | dN/dS | entry | receptor | VIROLOGY | coevolution | NTCP | transporter | DELTA VIRUS | hepadnavirus | positive selection | INFECTION | HBV
Journal Article
Virology, ISSN 0042-6822, 09/2018, Volume 522, pp. 122 - 130
Influenza neuraminidase (NA) is under selective pressure (SP) of both host immune system and drug use. Here, we assembled large datasets of NA sequences of... 
Site-specific selective pressures | Overall selection | Influenza | Neuraminidase | Positively selected sites | dN/dS ratio | MAXIMUM-LIKELIHOOD | PHYLOGENIES | HEMAGGLUTININ | SUSCEPTIBILITY | EVOLUTIONARY DYNAMICS | GLOBAL UPDATE | OSELTAMIVIR | VIROLOGY | SEQUENCE ALIGNMENT | INHIBITORS | VIRUSES | Genetic research | Antiviral agents | Drug resistance
Journal Article
Journal of Theoretical Biology, ISSN 0022-5193, 03/2006, Volume 239, Issue 2, pp. 226 - 235
Journal Article
Data in Brief, ISSN 2352-3409, 10/2019, Volume 26, p. 104499
Cereblon (CRBN) is a substrate recognition subunit of the CRL4 E3 ubiquitin ligase complex, directly binding to specific substrates for poly-ubiquitination... 
dN/dS | AMPK | E3 ubiquitin ligase | Cereblon | Positive selection
Journal Article
Journal of Evolutionary Biology, ISSN 1010-061X, 04/2019, Volume 32, Issue 4, pp. 390 - 394
The different proteins of any proteome evolve at enormously different rates. One of the primary factors influencing rates of protein evolution is expression... 
dN/dS | rates of evolution | N‐linked glycosylation | E–R anticorrelation | d(N)/d(S) | EVOLUTIONARY BIOLOGY | E-R anticorrelation | DATABASE | GENETICS & HEREDITY | ECOLOGY | TISSUES | MODEL | N-linked glycosylation | PROTEINS | LIKELIHOOD | Glycoproteins | Proteins | Evolution | Glycosylation | Endoplasmic reticulum | Quality control
Journal Article
Journal of Molecular Biology, ISSN 0022-2836, 09/2019, Volume 431, Issue 19, pp. 3860 - 3870
Enzymes exhibit a strong long-range evolutionary constraint that extends from their catalytic site and affects even distant sites, where site-specific... 
protein–protein interaction sites | enzyme evolution | Ligand binding sites | allosteric sites | evolutionary rate (dN/dS) | ALLOSTERIC REGULATION | MOAD | PROMISCUITY | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRUCTURAL DETERMINANTS | protein-protein interaction sites | DATABASE | PROTEIN EVOLUTION | IMPROVEMENTS | RESIDUES | Enzymes | Catalysis | Protein binding
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2014, Volume 31, Issue 1, pp. 212 - 231
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2019, Volume 1851, pp. 49 - 62
Gene duplication is an important process in the evolution of gene content in eukaryotic genomes. Understanding when gene duplicates contribute new molecular... 
Gene tree | dN/dS | Molecular evolution | Birth-death models | Gene duplication
Journal Article
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