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1. Full Text Mechanisms of Virus Assembly
by Perlmutter, Jason D and Hagan, Michael F
Annual review of physical chemistry, ISSN 0066-426X, 4/2015, Volume 66, Issue 1, pp. 217 - 239
thermodynamics | RNA packaging | membrane | kinetics | simulation | capsid | Genome, Viral | Antiviral Agents - pharmacology | Capsid - chemistry | Viruses - genetics | Humans | DNA, Viral - metabolism | Models, Molecular | Virus Diseases - virology | Viruses - drug effects | Drug Discovery | DNA, Viral - chemistry | Thermodynamics | Capsid - drug effects | RNA, Viral - chemistry | RNA, Viral - genetics | Virus Diseases - drug therapy | Antiviral Agents - chemistry | Viruses - chemistry | Virus Assembly - drug effects | RNA, Viral - metabolism | Virus Physiological Phenomena - drug effects | Capsid - metabolism | DNA, Viral - genetics | Membrane lipids | Models | Health aspects | Protein-protein interactions | Proteins | Lipids | Membranes | Genomes | Kinetics | Index Medicus | self-assembly | virus
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2. Full Text Sequence assembly demystified
by Nagarajan, Niranjan and Pop, Mihai
Nature reviews. Genetics, ISSN 1471-0056, 03/2013, Volume 14, Issue 3, pp. 157 - 167
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Metagenomics | Computational Biology - methods | Software | Genome, Human | Sequence Analysis, DNA - methods | Humans | Usage | Nucleotide sequencing | Research | Gene expression | Methods | DNA sequencing | Index Medicus
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3. Full Text Extending reference assembly models
by Church, Deanna M and Schneider, Valerie A and Steinberg, Karyn Meltz and Schatz, Michael C and Quinlan, Aaron R and Chin, Chen-Shan and Kitts, Paul A and Aken, Bronwen and Marth, Gabor T and Hoffman, Michael M and Herrero, Javier and Mendoza, M. Lisandra Zepeda and Durbin, Richard and Flicek, Paul
Genome Biology, ISSN 1474-7596, 01/2015, Volume 16, Issue 1, pp. 13 - 13
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Databases, Genetic | Computational Biology - methods | Software | Genome, Human | Genomics - methods | Humans | Haplotypes | Nucleotide sequence | Cloning | Genomics | Data processing | Genomes | Gene expression | Databases | Population | Graph representations | Evolution & development | Bioinformatics | Chromosomes | Index Medicus | Comment
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4. Full Text Phased diploid genome assembly with single-molecule real-time sequencing
by Chin, Chen-Shan and Peluso, Paul and Sedlazeck, Fritz J and Nattestad, Maria and Concepcion, Gregory T and Clum, Alicia and Dunn, Christopher and O'Malley, Ronan and Figueroa-Balderas, Rosa and Morales-Cruz, Abraham and Cramer, Grant R and Delledonne, Massimo and Luo, Chongyuan and Ecker, Joseph R and Cantu, Dario and Rank, David R and Schatz, Michael C
Nature methods, ISSN 1548-7091, 12/2016, Volume 13, Issue 12, pp. 1050 - 1054
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Haplotypes | DNA, Fungal - genetics | Genome, Plant - genetics | Humans | Sequence Analysis, DNA | Arabidopsis - genetics | Diploidy | Algorithms | Genome, Fungal - genetics | Basidiomycota - genetics | Polymorphism, Single Nucleotide - genetics | Heterozygote | Genomics - methods | Vitis - genetics | DNA, Plant - genetics | Genetic aspects | Nucleotide sequencing | Research | Analysis | DNA sequencing | Index Medicus
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5. Full Text GAGE: A critical evaluation of genome assemblies and assembly algorithms
by Salzberg, Steven L and Phillippy, Adam M and Zimin, Aleksey and Puiu, Daniela and Magoc, Tanja and Koren, Sergey and Treangen, Todd J and Schatz, Michael C and Delcher, Arthur L and Roberts, Michael and Marcxais, Guillaume and Pop, Mihai and Yorke, James A
Genome research, ISSN 1088-9051, 03/2012, Volume 22, Issue 3, pp. 557 - 567
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genome, Bacterial - genetics | Computational Biology - methods | Reproducibility of Results | Algorithms | Animals | Humans | Internet | Genome | Genomics - methods | Sequence Analysis, DNA | Usage | Research | Nucleotide sequencing | Nucleotide sequence | Human genome | DNA sequencing | Index Medicus | Resource
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6. Full Text Metabolic Diversification: Independent Assembly of Operon-like Gene Clusters in Different Plants
by Ben Field and Anne E. Osbourn
Science (American Association for the Advancement of Science), ISSN 0036-8075, 4/2008, Volume 320, Issue 5875, pp. 543 - 547
Triterpenes | Enzymes | Yeasts | Oats | Plant roots | Multigene family | Reports | Genomes | Biosynthesis | Plants | Metabolism | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Molecular and cellular biology | Molecular genetics | Gene expression | Gene Expression | Multigene Family | Intramolecular Transferases - genetics | Plant Roots - metabolism | Genes, Plant | Operon | Cytochrome P-450 Enzyme System - metabolism | Acyltransferases - metabolism | Acyltransferases - genetics | Plant Epidermis - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Intramolecular Transferases - metabolism | Arabidopsis - microbiology | Metabolic Networks and Pathways - genetics | Avena - genetics | Cytochrome P-450 Enzyme System - genetics | Plant Diseases | Triterpenes - metabolism | Evolution, Molecular | Arabidopsis thaliana | Physiological aspects | Operons | Influence | Genetic aspects | Properties | Terpenes | Flowers & plants | Genes | Genomics | Botany | Index Medicus
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7. Full Text Ragout - A reference-assisted assembly tool for bacterial genomes
by Kolmogorov, Mikhail and Raney, Brian and Paten, Benedict and Pham, Son
Bioinformatics, ISSN 1367-4803, 06/2014, Volume 30, Issue 12, pp. I302 - I309
Staphylococcus aureus - genetics | Genome, Bacterial | Genomics - standards | Synteny | Sequence Analysis, DNA - standards | Phylogeny | Chromosomes, Bacterial | High-Throughput Nucleotide Sequencing - standards | Reference Standards | Algorithms | Software | Genomics - methods | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Index Medicus | Ismb 2014 Proceedings Papers Committee
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