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Water Research, ISSN 0043-1354, 01/2020, Volume 168, p. 115167
Journal Article
Molecular ecology, 07/2018, Volume 27, Issue 14, p. 2913
Phototrophic biofilms are ubiquitous in freshwater and marine environments where they are critical for biogeochemical cycling, food webs and in industrial... 
Journal Article
Cell Metabolism, ISSN 1550-4131, 10/2019, Volume 30, Issue 4, pp. 800 - 823.e7
Although antibiotics disturb the structure of the gut microbiota, factors that modulate these perturbations are poorly understood. Bacterial metabolism is an... 
metatranscriptomics | metagenomics | metabolism | diet | antibiotics | microbiome | tolerance | dysbiosis
Journal Article
Journal of Forensic Sciences, ISSN 0022-1198, 2019
Multiple methods have been proposed to provide accurate time since death estimations, and recently, the discovery of bacterial community turnover during... 
postmortem microbiome | forensic science | decomposition ecology | metatranscriptomics | postmortem interval | necrobiome
Journal Article
PeerJ, ISSN 2167-8359, 2015, Volume 2015, Issue 10
Advances in high-throughput sequencing and 'omics technologies are revolutionizing studies of naturally occurring microbial communities. Comprehensive... 
Metagenomics | Visualization | Metatranscriptomics | Genome binning | Assembly | SNP profiling | READ ALIGNMENT | BACTERIA | RARE | RAST SERVER | MULTIDISCIPLINARY SCIENCES | METAGENOMIC ANALYSIS | SINGLE-CELL | GENOMES | COMMUNITY RESPONSE | DEEP-SEA | SEQUENCING DATA
Journal Article
Frontiers in Microbiology, ISSN 1664-302X, 2014, Volume 5, p. 130
One of the major environmental concerns of the Deepwater Horizon oil spill in the Gulf of Mexico was the ecological impact of the oil that reached shorelines... 
Oil spill | Hydrocarbons | Metatranscriptomics | Microbial communities | 16S rRNA gene | oil spill | microbial communities | metatranscriptomics
Journal Article
Frontiers in Microbiology, 2015, Volume 6
Phytoplankton blooms exhibit a severe impact on bacterioplankton communities as they change nutrient availabilities and other environmental factors. In the... 
Algal bloom | Metagenomics | bacterioplankton | Metatranscriptomics | Planktomarina temperata | SAR92 | Functional changes | Algal Bloom | metatranscriptomics
Journal Article
Water Research, ISSN 0043-1354, 01/2020, Volume 168, p. 115142
Microbial nitrogen removal mediated by anaerobic ammonium oxidation (anammox) are cost-effective, yet it is time-consuming to accumulate the slow-growing... 
Metagenomics | Metatranscriptomics | AOA | Comammox | Anammox-inoculated WWTPs | Nitrogen cycling
Journal Article
Annual review of virology, ISSN 2327-056X, 9/2019, Volume 6, Issue 1, pp. 119 - 139
Although viruses comprise the most abundant genetic material in the biosphere, to date only several thousand virus species have been formally defined. Such a... 
virosphere | genomics | diversity | evolution | taxonomy | metatranscriptomics
Journal Article
FRONTIERS IN MICROBIOLOGY, ISSN 1664-302X, 09/2017, Volume 8
The development of next generation sequencing (NGS) techniques has enabled researchers to study and understand the world of microorganisms from broader and... 
PROCESSING ENVIRONMENT | LISTERIA-MONOCYTOGENES | RIBOSOMAL-RNA AMPLICONS | METATRANSCRIPTOMIC ANALYSIS | ANTIMICROBIAL RESISTANCE GENES | next generation sequencing | MICROBIOLOGY | OXFORD NANOPORE MINION | food microbiome | METAGENOMIC ANALYSIS | 16S rDNA | metatranscriptomics | metagenomics | DNA | LACTIC-ACID BACTERIA | HUMAN GUT
Journal Article
Frontiers in Microbiology, ISSN 1664-302X, 09/2017, Volume 8, p. 1829
The development of next generation sequencing (NGS) techniques has enabled researchers to study and understand the world of microorganisms from broader and... 
Food microbiome | Metagenomics | Metatranscriptomics | 16S rDNA | Next generation sequencing | metatranscriptomics | food microbiome | next generation sequencing | metagenomics
Journal Article
FRONTIERS IN MICROBIOLOGY, ISSN 1664-302X, 08/2015, Volume 6, p. 805
Phytoplankton blooms exhibit a severe impact on bacterioplankton communities as they change nutrient availabilities and other environmental factors. In the... 
BACTERIAL COMMUNITY | MARINE BACTERIOPLANKTON | PATTERNS | MICROBIOLOGY | RIBOSOMAL-RNA | SAR92 | TOTAL RNA | functional changes | ROSEOBACTER | MAGNITUDE | DATABASE | metatranscriptomics | bacterioplankton | metagenomics | DYNAMICS | Planktomarina temperata | DIVERSITY | algal bloom
Journal Article
Frontiers in Microbiology, ISSN 1664-302X, 10/2018, Volume 9
Conventional water resources are not sufficient in many regions to meet the needs of growing populations. Due to cyclical weather cycles, drought, and climate... 
water reuse | water purification | pathogens | metatranscriptomics | metagenomics
Journal Article