Nature, ISSN 0028-0836, 05/2009, Volume 459, Issue 7244, pp. 193 - 199
Marine microbial communities are engines of globally important processes, such as the marine carbon, nitrogen and sulphur cycles. Recent data on the structures...
MICROORGANISMS | BIOGEOGRAPHY | BACTERIAL DIVERSITY | OCEAN | MULTIDISCIPLINARY SCIENCES | MARINE VIRUSES | NORTHWEST ATLANTIC | PATTERNS | MICRODIVERSITY | BIOMASS PRODUCTION | SEA | Marine Biology | Animals | Ecosystem | Greenhouse Effect | Genomics - methods | Genomics - trends | Water Microbiology | Microorganisms | Biogeochemistry | Microbial populations | Distribution | Microbial mutation | Environmental aspects | Research | Natural history | Studies | Bacteria | Organisms | Microbiology | Genes
MICROORGANISMS | BIOGEOGRAPHY | BACTERIAL DIVERSITY | OCEAN | MULTIDISCIPLINARY SCIENCES | MARINE VIRUSES | NORTHWEST ATLANTIC | PATTERNS | MICRODIVERSITY | BIOMASS PRODUCTION | SEA | Marine Biology | Animals | Ecosystem | Greenhouse Effect | Genomics - methods | Genomics - trends | Water Microbiology | Microorganisms | Biogeochemistry | Microbial populations | Distribution | Microbial mutation | Environmental aspects | Research | Natural history | Studies | Bacteria | Organisms | Microbiology | Genes
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PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets
PLoS ONE, ISSN 1932-6203, 08/2012, Volume 7, Issue 8, p. e43093
As 16S rRNA gene targeted massively parallel sequencing has become a common tool for microbial diversity investigations, numerous advances have been made to...
AMPLIFICATION | TEMPERATURE | HIGH-THROUGHPUT | MICROBIAL DIVERSITY | DNA | MULTIDISCIPLINARY SCIENCES | DEEP-SEA | GENES | SPECIES RICHNESS | RARE BIOSPHERE | EFFICIENCY | Genes, Bacterial | Computational Biology - methods | Reproducibility of Results | Genes, Archaeal | Databases, Genetic | Molecular Sequence Data | DNA Primers - genetics | Genetic Techniques | Bacteria - genetics | Polymerase Chain Reaction - methods | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Sequence Analysis, DNA - methods | RNA | Multiprocessing | Analysis | Quality control | Nucleotide sequencing | Biological diversity | DNA sequencing | Community structure | Multiplexing | rRNA 16S | Communities | Ecosystems | Taxonomy | Genes | Bias | Bar codes | Abundance | Genomes | Multiculturalism & pluralism | Environmental engineering | Gene sequencing | Datasets | Artifacts | Microorganisms | Quality | Data sets | Relative abundance | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid
AMPLIFICATION | TEMPERATURE | HIGH-THROUGHPUT | MICROBIAL DIVERSITY | DNA | MULTIDISCIPLINARY SCIENCES | DEEP-SEA | GENES | SPECIES RICHNESS | RARE BIOSPHERE | EFFICIENCY | Genes, Bacterial | Computational Biology - methods | Reproducibility of Results | Genes, Archaeal | Databases, Genetic | Molecular Sequence Data | DNA Primers - genetics | Genetic Techniques | Bacteria - genetics | Polymerase Chain Reaction - methods | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Sequence Analysis, DNA - methods | RNA | Multiprocessing | Analysis | Quality control | Nucleotide sequencing | Biological diversity | DNA sequencing | Community structure | Multiplexing | rRNA 16S | Communities | Ecosystems | Taxonomy | Genes | Bias | Bar codes | Abundance | Genomes | Multiculturalism & pluralism | Environmental engineering | Gene sequencing | Datasets | Artifacts | Microorganisms | Quality | Data sets | Relative abundance | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid
Journal Article
Geoderma, ISSN 0016-7061, 03/2019, Volume 337, pp. 290 - 299
Soil microbial communities are crucial in maintaining the functions of wetland ecosystems. Understanding the microbial community structure and the key factors...
Wetland soils | Spatial distribution | Community assemblage | Environmental filtering | Bacterial community | PATTERNS | QINGHAI-TIBETAN PLATEAU | GRADIENT | SOIL SCIENCE | MICROBIAL BIOGEOGRAPHY | TEMPERATURE | METAGENOMICS | ORGANIC-CARBON | FUNGAL | BETA-DIVERSITY | VEGETATION | Microbiota (Symbiotic organisms) | Soil microbiology | Biological diversity | Wetlands
Wetland soils | Spatial distribution | Community assemblage | Environmental filtering | Bacterial community | PATTERNS | QINGHAI-TIBETAN PLATEAU | GRADIENT | SOIL SCIENCE | MICROBIAL BIOGEOGRAPHY | TEMPERATURE | METAGENOMICS | ORGANIC-CARBON | FUNGAL | BETA-DIVERSITY | VEGETATION | Microbiota (Symbiotic organisms) | Soil microbiology | Biological diversity | Wetlands
Journal Article
Current Opinion in Biotechnology, ISSN 0958-1669, 2013, Volume 27, pp. 55 - 64
Graphical abstract
Internal Medicine | MICROORGANISMS | METABOLOMICS | METABOLISM | SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | DYNAMICS | DIVERSITY | SCALE | BACTERIAL | IDENTIFICATION | PROTEOMICS | Anaerobiosis | Genome, Bacterial - genetics | Metabolomics | Metagenomics | Metabolic Networks and Pathways - genetics | Microbial Interactions - genetics | Bioreactors - microbiology | Proteomics | Transcriptome | Conserved Sequence | Biotechnology | Microorganisms | Dynamic tests | Molecular structure | Reactors | Communities | Performance measurement | Digesters
Internal Medicine | MICROORGANISMS | METABOLOMICS | METABOLISM | SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | DYNAMICS | DIVERSITY | SCALE | BACTERIAL | IDENTIFICATION | PROTEOMICS | Anaerobiosis | Genome, Bacterial - genetics | Metabolomics | Metagenomics | Metabolic Networks and Pathways - genetics | Microbial Interactions - genetics | Bioreactors - microbiology | Proteomics | Transcriptome | Conserved Sequence | Biotechnology | Microorganisms | Dynamic tests | Molecular structure | Reactors | Communities | Performance measurement | Digesters
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European Journal of Soil Biology, ISSN 1164-5563, 05/2016, Volume 74, pp. 1 - 8
Previous studies already demonstrated that biochar addition reduces nitrogen (N) leaching in soil, but little information is available about its effects on N...
High-throughput sequencing | Biochar | Microbial biomass | Bacterial community structure | Nitrogen leaching | Urea | Electrical conductivity | RNA | Analysis | Non-point source pollution | Leaching | Electric properties | Soil microbiology
High-throughput sequencing | Biochar | Microbial biomass | Bacterial community structure | Nitrogen leaching | Urea | Electrical conductivity | RNA | Analysis | Non-point source pollution | Leaching | Electric properties | Soil microbiology
Journal Article
Soil Biology and Biochemistry, ISSN 0038-0717, 2010, Volume 42, Issue 5, pp. 831 - 841
Soil and rhizosphere microbial communities in agroecosystems may be affected by soil, climate, plant species, and management. The management and environmental...
Rhizosphere | PLFA | Hairy vetch | Soil | Mulch | Tomato | Microbial community | Rye | PLANT | CARBON | MANAGEMENT | BACTERIAL | LEVEL | RIBOSOMAL-RNA | FATTY-ACID PROFILES | SOIL SCIENCE | BIOMASS | NITROGEN | COVER CROPS
Rhizosphere | PLFA | Hairy vetch | Soil | Mulch | Tomato | Microbial community | Rye | PLANT | CARBON | MANAGEMENT | BACTERIAL | LEVEL | RIBOSOMAL-RNA | FATTY-ACID PROFILES | SOIL SCIENCE | BIOMASS | NITROGEN | COVER CROPS
Journal Article
Soil Biology and Biochemistry, ISSN 0038-0717, 01/2014, Volume 68, pp. 392 - 401
Rhizosphere bacteria have significant contributions to crop health, productivity and carbon sequestration. As maize ( ) is an important economic crop, its...
Predominant bacterial genera | Root exudates | Dynamics | Plant growth stage | Pyrosequencing | Maize rhizosphere | Bacterial community structure | LIMITATIONS | ZEA-MAYS | POPULATIONS | RIBOSOMAL-RNA | GRADIENT GEL-ELECTROPHORESIS | ALIGNMENTS | SOIL SCIENCE | MICROBIAL COMMUNITIES | SOIL TYPE | DIVERSITY | PLANT-GROWTH STAGES | Corn | Bacteria | Analysis
Predominant bacterial genera | Root exudates | Dynamics | Plant growth stage | Pyrosequencing | Maize rhizosphere | Bacterial community structure | LIMITATIONS | ZEA-MAYS | POPULATIONS | RIBOSOMAL-RNA | GRADIENT GEL-ELECTROPHORESIS | ALIGNMENTS | SOIL SCIENCE | MICROBIAL COMMUNITIES | SOIL TYPE | DIVERSITY | PLANT-GROWTH STAGES | Corn | Bacteria | Analysis
Journal Article
Applied and Environmental Microbiology, ISSN 0099-2240, 08/2009, Volume 75, Issue 15, pp. 5111 - 5120
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit...
MICROORGANISMS | TAXA | MICROBIAL BIOGEOGRAPHY | MANAGEMENT | MEMBERS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | LAND-USE | CLASSIFICATION | PATTERNS | MICROBIOLOGY | DIVERSITY | 16S RIBOSOMAL-RNA | South America | Bacteria - isolation & purification | DNA, Bacterial - genetics | Soil Microbiology | Bacteria - classification | DNA, Bacterial - chemistry | Soil - analysis | Biodiversity | Bacteria - genetics | North America | Sequence Analysis, DNA - methods | Hydrogen-Ion Concentration | Biogeography | Usage | Cladistic analysis | Research | Analysis | Soil microbiology | Community composition | Environmental Microbiology
MICROORGANISMS | TAXA | MICROBIAL BIOGEOGRAPHY | MANAGEMENT | MEMBERS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | LAND-USE | CLASSIFICATION | PATTERNS | MICROBIOLOGY | DIVERSITY | 16S RIBOSOMAL-RNA | South America | Bacteria - isolation & purification | DNA, Bacterial - genetics | Soil Microbiology | Bacteria - classification | DNA, Bacterial - chemistry | Soil - analysis | Biodiversity | Bacteria - genetics | North America | Sequence Analysis, DNA - methods | Hydrogen-Ion Concentration | Biogeography | Usage | Cladistic analysis | Research | Analysis | Soil microbiology | Community composition | Environmental Microbiology
Journal Article
Applied and Environmental Microbiology, ISSN 0099-2240, 07/2011, Volume 77, Issue 13, pp. 4618 - 4625
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit...
TEA ORCHARD SOILS | N MINERALIZATION | ENZYME-ACTIVITIES | MICROBIAL BIOMASS | ARCHAEA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BACTERIAL COMMUNITIES | LAND-USE | MICROBIOLOGY | DIVERSITY | GRASSLAND SOILS | RED SOIL | DNA, Archaeal - genetics | Trees | Bacteria - metabolism | DNA, Archaeal - chemistry | Oxidation-Reduction | Ammonia - metabolism | Soil Microbiology | Molecular Sequence Data | DNA, Bacterial - chemistry | Phylogeny | Pinus | Biodiversity | Sequence Analysis, DNA | Tea | Archaea - metabolism | DNA, Bacterial - genetics | Polymorphism, Restriction Fragment Length | Nitrification | Soil - chemistry | Cluster Analysis | Hydrogen-Ion Concentration | Physiological aspects | Nitrogen-fixing microorganisms | Research | Archaeabacteria | Soil microbiology | Index Medicus | Microbial Ecology
TEA ORCHARD SOILS | N MINERALIZATION | ENZYME-ACTIVITIES | MICROBIAL BIOMASS | ARCHAEA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BACTERIAL COMMUNITIES | LAND-USE | MICROBIOLOGY | DIVERSITY | GRASSLAND SOILS | RED SOIL | DNA, Archaeal - genetics | Trees | Bacteria - metabolism | DNA, Archaeal - chemistry | Oxidation-Reduction | Ammonia - metabolism | Soil Microbiology | Molecular Sequence Data | DNA, Bacterial - chemistry | Phylogeny | Pinus | Biodiversity | Sequence Analysis, DNA | Tea | Archaea - metabolism | DNA, Bacterial - genetics | Polymorphism, Restriction Fragment Length | Nitrification | Soil - chemistry | Cluster Analysis | Hydrogen-Ion Concentration | Physiological aspects | Nitrogen-fixing microorganisms | Research | Archaeabacteria | Soil microbiology | Index Medicus | Microbial Ecology
Journal Article
PLoS ONE, ISSN 1932-6203, 06/2008, Volume 3, Issue 6, pp. e2527 - e2527
Background: Soil ecosystems harbor the most complex prokaryotic and eukaryotic microbial communities on Earth. Experimental approaches studying these systems...
MULTIDISCIPLINARY SCIENCES | RNA, Bacterial - genetics | Species Specificity | Soil Microbiology | RNA, Ribosomal - genetics | Ecosystem | RNA, Messenger - genetics | RNA | Ecosystems | Analysis | Soil microbiology | Microbial activity | Trophic levels | Communities | Taxonomy | Genomics | Bias | Ribosomal DNA | Carbon dioxide | Genomes | Biology | Gene sequencing | Taxa | Phylogenetics | Oxidation | Life sciences | Trends | Carbon capture and storage | Bioinformatics | Deoxyribonucleic acid--DNA | Tags | Community structure | Automation | rRNA | Cloning | Soil structure | Abundance | Ecology | Gene expression | Ribonucleic acid--RNA | Carbon | Studies | Polymerase chain reaction | Ammonia | Soils | Geobiology | Fixation | Soil microorganisms | Relative abundance | Methods | Structure-function relationships | Deoxyribonucleic acid | Ribonucleic acid | DNA
MULTIDISCIPLINARY SCIENCES | RNA, Bacterial - genetics | Species Specificity | Soil Microbiology | RNA, Ribosomal - genetics | Ecosystem | RNA, Messenger - genetics | RNA | Ecosystems | Analysis | Soil microbiology | Microbial activity | Trophic levels | Communities | Taxonomy | Genomics | Bias | Ribosomal DNA | Carbon dioxide | Genomes | Biology | Gene sequencing | Taxa | Phylogenetics | Oxidation | Life sciences | Trends | Carbon capture and storage | Bioinformatics | Deoxyribonucleic acid--DNA | Tags | Community structure | Automation | rRNA | Cloning | Soil structure | Abundance | Ecology | Gene expression | Ribonucleic acid--RNA | Carbon | Studies | Polymerase chain reaction | Ammonia | Soils | Geobiology | Fixation | Soil microorganisms | Relative abundance | Methods | Structure-function relationships | Deoxyribonucleic acid | Ribonucleic acid | DNA
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