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NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 07/2019, Volume 47, Issue W1, pp. W5 - W10
Here, we describe a web server that integrates structural alignments with the MAFFT multiple sequence alignment (MSA) tool. For this purpose, we have prepared... 
DATABASE | INFORMATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | MULTIPLE | PROGRAM | ACCURACY | Web Server Issue
Journal Article
Bioinformation, 02/2010, Volume 4, Issue 8, p. 366
Comparing the 3D structures of proteins is an important but computationally hard problem in bioinformatics. In this paper, we propose studying the problem when... 
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2014, Volume 1079, pp. 273 - 283
Multiple Sequence Alignment (MSA) is an essential tool in protein structure modeling, gene and protein function prediction, DNA motif recognition, phylogenetic... 
Posterior probability-based | Residue-residue contact information | Secondary structure | Multiple sequence alignment | Solvent accessibility | Bioinformatics | Probability | Sequence Alignment - methods | Computational Biology - methods | Proteins - chemistry | Index Medicus
Conference Proceeding
Methods in Molecular Biology, ISSN 1064-3745, 2014, Volume 1079, pp. 263 - 271
Conference Proceeding
SpringerPlus, ISSN 2193-1801, 01/2015, Volume 5, Issue 1, pp. 1 - 27
Background: Cysteine rich protein families are notoriously difficult to align due to low sequence identity and frequent insertions and deletions. Results: Here... 
Cysteine-rich proteins | Alignment | Defensin | Barcode | FOLD | EVOLUTION | PEPTIDES | DISULFIDE CONNECTIVITY | MULTIDISCIPLINARY SCIENCES | MULTIPLE SEQUENCE ALIGNMENTS | DEFENSINS | PREDICTION
Journal Article
Methods in molecular biology (Clifton, N.J.), ISSN 1064-3745, 2014, Volume 1079, pp. 263 - 271
Multiple sequence alignment (MSA) is an essential tool with many applications in bioinformatics and computational biology. Accurate MSA construction for... 
consistency-based scoring | database searches | 3-dimensional structural alignment | Multiple sequence alignment | probabilistic model of profile-profile alignment
Journal Article
In the thesis, we focus on developing frameworks to comparing and aligning multiple geometric shape data. In particular, the research covers two main subjects:... 
EPO | protein | folding | multiple | alignment | trajectory | Smolign | structure
Dissertation