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Nature, ISSN 0028-0836, 2012, Volume 485, Issue 7400, pp. 635 - 641
Journal Article
International Journal of Molecular Sciences, ISSN 1422-0067, 10/2019, Volume 20, Issue 20, p. 5075
Rapid reconstruction of genome-scale protein–protein interaction (PPI) networks is instrumental in understanding the cellular processes and disease... 
protein–protein interaction | paralog/ortholog | negative data sampling | machine learning | l2-regularized logistic regression
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2019, Volume 20, Issue 1, pp. 1 - 12
Orthology inference is normally based on full-length protein sequences. However, most proteins contain independently folding and recurring regions, domains.... 
Proteins | Analysis | Algorithms | Domain ortholog | Protein domain | Orthology
Journal Article
by Bowman, John L and Kohchi, Takayuki and Yamato, Katsuyuki T and Jenkins, Jerry and Shu, Shengqiang and Ishizaki, Kimitsune and Yamaoka, Shohei and Nishihama, Ryuichi and Nakamura, Yasukazu and Berger, Frédéric and Adam, Catherine and Aki, Shiori Sugamata and Althoff, Felix and Araki, Takashi and Arteaga-Vazquez, Mario A and Balasubrmanian, Sureshkumar and Barry, Kerrie and Bauer, Diane and Boehm, Christian R and Briginshaw, Liam and Caballero-Perez, Juan and Catarino, Bruno and Chen, Feng and Chiyoda, Shota and Chovatia, Mansi and Davies, Kevin M and Delmans, Mihails and Demura, Taku and Dierschke, Tom and Dolan, Liam and Dorantes-Acosta, Ana E and Eklund, D. Magnus and Florent, Stevie N and Flores-Sandoval, Eduardo and Fujiyama, Asao and Fukuzawa, Hideya and Galik, Bence and Grimanelli, Daniel and Grimwood, Jane and Grossniklaus, Ueli and Hamada, Takahiro and Haseloff, Jim and Hetherington, Alexander J and Higo, Asuka and Hirakawa, Yuki and Hundley, Hope N and Ikeda, Yoko and Inoue, Shin-ichiro and Inoue, Keisuke and Ishida, Sakiko and Jia, Qidong and Kakita, Mitsuru and Kanazawa, Takehiko and Kawai, Yosuke and Kawashima, Tomokazu and Kennedy, Megan and Kinose, Keita and Kinoshita, Toshinori and Kohara, Yuji and Koide, Eri and Komatsu, Kenji and Kopischke, Sarah and Kubo, Minoru and Kyozuka, Junko and Lagercrantz, Ulf and Lin, Shih-Shun and Lindquist, Erika and Lipzen, Anna M and Lu, Chia-Wei and De Luna, Efraín and Martienssen, Robert A and Minamino, Naoki and Mizutani, Miya and Mizutani, Masaharu and Mochizuki, Nobuyoshi and Monte, Isabel and Mosher, Rebecca and Nagasaki, Hideki and Nakagami, Hirofumi and Naramoto, Satoshi and Nishitani, Kazuhiko and Ohtani, Misato and Okamoto, Takashi and Okumura, Masaki and Phillips, Jeremy and Pollak, Bernardo and Reinders, Anke and Rövekamp, Moritz and Sano, Ryosuke and Sawa, Shinichiro and Schmid, Marc W and Shirakawa, Makoto and Solano, Roberto and Spunde, Alexander and Suetsugu, Noriyuki and Sugano, Sumio and Sugiyama, Akifumi and Sun, Rui and Suzuki, Yutaka and Takenaka, Mizuki and ... and Univ. of California, Oakland, CA (United States) and Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC) and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet and Växtekologi och evolution and Institutionen för ekologi och genetik
Cell, ISSN 0092-8674, 10/2017, Volume 171, Issue 2, pp. 287 - 304.e15
Journal Article
genesis, ISSN 1526-954X, 11/2019, Volume 57, Issue 11-12, pp. e23331 - n/a
Summary Members of the wnt gene family encode secreted glycoproteins that mediate critical intercellular communications in metazoans. Large‐scale genome and... 
sea urchin | wnt2 ortholog | WNT ligand | echinoderm | Life Sciences | Development Biology | Embryology and Organogenesis
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 2018, Volume 35, Issue 3, pp. 543 - 548
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly changing technologies and expanding data volumes make evaluation of... 
Metagenomics | Evolution | Transcriptomics | Bioinformatics | PLANT | EVOLUTIONARY | ORTHOLOGS | BIOCHEMISTRY & MOLECULAR BIOLOGY | COMPLETENESS | evolution | BACTERIAL | ORTHODB | GENOME | EVOLUTIONARY BIOLOGY | metagenomics | FUNGAL | bioinformatics | GENETICS & HEREDITY | transcriptomics | IMPROVEMENTS | TOOL | Fast Track
Journal Article
MOLECULAR VISION, ISSN 1090-0535, 11/2019, Volume 25, pp. 766 - 779
Purpose: To elucidate the variant spectrum of the EYS gene in a large cohort of Japanese patients with autosomal recessive and simplex retinitis pigmentosa... 
ORTHOLOG | BIOCHEMISTRY & MOLECULAR BIOLOGY | OPHTHALMOLOGY | EYES SHUT HOMOLOG | IDENTIFICATION | LARGE COHORT | MUTATION SPECTRUM
Journal Article
Journal Article
Frontiers in Plant Science, ISSN 1664-462X, 08/2012, Volume 3, p. 198
Chromosomal synteny analysis is important in genome comparison to reveal genomic evolution of related species. Shared synteny describes genomic fragments from... 
Arabidopsis thaliana | Brassica rapa | Thellugiella parvula | Synteny | Brassicaceae | Arabidopsis lyrata | Ortholog | ortholog | synteny | PLANT SCIENCES
Journal Article
Journal of Experimental Botany, ISSN 0022-0957, 04/2018, Volume 69, Issue 9, pp. 2403 - 2414
Both strigolactones (SLs) and abscisic acid (ABA) biosynthetically originate from carotenoids. Considering their common origin, the interaction of these two... 
ORTHOLOG | TOLERANCE | CAROTENOIDS | rice | CLEAVAGE | MAX1 | PLANT SCIENCES | DWARF27 | HORMONE | drought | biosynthesis | strigolactones | Abscisic acid | CARLACTONE | ARABIDOPSIS | ACTS
Journal Article