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by Malta, Tathiane M and Sokolov, Artem and Gentles, Andrew J and Burzykowski, Tomasz and Poisson, Laila and Weinstein, John N and Kamińska, Bożena and Huelsken, Joerg and Omberg, Larsson and Gevaert, Olivier and Colaprico, Antonio and Czerwińska, Patrycja and Mazurek, Sylwia and Mishra, Lopa and Heyn, Holger and Krasnitz, Alex and Godwin, Eryn M and Godwin, Andrew K and Lazar, Alexander J and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Linghua and Wang, Jioajiao and Wang, Timothy and Wang, Zhining and Wang, Min and Wang, Jing and Yang, Ju Dong and Yang, Hannah and Yang, Liming and Yang, Ian and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Zhang, Hailei and Zhang, Lizhi and Zhang, Hongzheng and Zhang, Wei and Zhang, Jiexin and Zhang, Hongxin and Chudamani, Sudha and Liu, Wenbin and Liu, Jia and Liu, Xiuping and Liu, Yuexin and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Miller, Judy and Miller, Christopher A and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Akbani, Rehan and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Li, Wei and Li, Jun and Liang, Han and Ling, Shiyun and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Abeshouse, Adam and Armenia, Joshua and Chakravarty, Debyani and ... and Cancer Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell, ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 338 - 354.e15
Cancer progression involves the gradual loss of a differentiated phenotype and acquisition of progenitor and stem-cell-like features. Here, we provide novel... 
pan-cancer | genomic | stemness | epigenomic | dedifferentiation | cancer stem cells | machine learning | The Cancer Genome Atlas | ANNEXIN 1 | GENE-EXPRESSION SIGNATURE | CELLS | OVEREXPRESSION | BIOCHEMISTRY & MOLECULAR BIOLOGY | CONNECTIVITY MAP | TUMOR | SELF-RENEWAL | EMBRYONIC STEM | PROLIFERATION | CANCER | CELL BIOLOGY
Journal Article
by Sanchez-Vega, Francisco and Mina, Marco and Armenia, Joshua and Chatila, Walid K and Luna, Augustin and La, Konnor and La, Konnor C and Dimitriadoy, Sofia and Liu, Jia and Liu, Yuexin and Liu, David L and Liu, Wenbin and Liu, Xiuping and Kantheti, Havish S and Saghafinia, Sadegh and Chakravarty, Debyani and Daian, Foysal and Gao, Qingsong and Gao, Galen F and Gao, Jianjiong and Bailey, Matthew H and Bailey, Matthew and Liang, Wen-Wei and Liang, Han and Foltz, Steven M and Shmulevich, Ilya and Ding, Li and Heins, Zachary and Heins, Zachary J and Ochoa, Angelica and Gross, Benjamin E and Gross, Benjamin and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Zhang, Jiexin and Zhang, Jiashan (Julia) and Zhang, Lizhi and Kundra, Ritika and Kandoth, Cyriac and Bahceci, Istemi and Dervishi, Leonard and Dogrusoz, Ugur and Zhou, Wanding and Shen, Hui and Laird, Peter W and Way, Gregory P and Greene, Casey S and Xiao, Yonghong and Wang, Timothy and Wang, Jioajiao and Wang, Chen and Wang, Zhining and Wang, Linghua and Wang, Jing and Wang, Min and Iavarone, Antonio and Berger, Ashton C and Berger, Alice H and Bivona, Trever G and Lazar, Alexander J and Hammer, Gary D and Giordano, Thomas and Kwong, Lawrence N and McArthur, Grant and Huang, Chenfei and Tward, Aaron D and Frederick, Mitchell J and McCormick, Frank and Meyerson, Matthew and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Hannah and Yang, Ian and Yang, Ju Dong and Yang, Liming and Zenklusen, Jean C and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and ... and Cancer Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell, ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 321 - 337.e10
Journal Article
Oncotarget, ISSN 1949-2553, 08/2018, Volume 9, Issue 65, pp. 32406 - 32407
Journal Article
Molecular Medicine, ISSN 1076-1551, 12/2019, Volume 25, Issue 1, pp. 1 - 14
Abstract Background Since its discovery almost three decades ago, the Janus kinase (JAK)-signal transducer and activator of transcription (STAT) pathway has... 
Tumor immunity | Glioma | Renal cancer | JAK-STAT | Pan-cancer
Journal Article
Journal Article
by Liu and Pan and Li and Yang
Genes, ISSN 2073-4425, 10/2019, Volume 10, Issue 10, p. 778
For cancer diagnosis, many DNA methylation markers have been identified. However, few studies have tried to identify DNA methylation markers to diagnose... 
biomarker, methylation, pan-cancer, deep learning, CpG, promoter
Journal Article