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1. Methods in protein structure analysis
by Appella, Ettore and Atassi, M. Z
1995, ISBN 0306451247, xvii, 534
Proteins | Amino acid sequence | Analysis
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2. Proteomics in functional genomics
: protein structure analysis
by Jollès, Pierre and Jörnvall, Hans
2000, EXS, ISBN 3764358858, Volume 88., xiii, 236
Proteins | Genomes | Gel electrophoresis | Analysis
Book
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3. Full Text The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
by Alva, V and Nam, SZ and Soding, J and Lupas, AN
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 07/2016, Volume 44, Issue W1, pp. W410 - W415
The MPI Bioinformatics Toolkit (http://toolkit.tuebingen.mpg.de) is an open, interactive web service for comprehensive and collaborative protein bioinformatic... 
ALIGNMENT | DATABASE | PROBABILISTIC CONSISTENCY | WEB | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRIMERIC AUTOTRANSPORTER ADHESINS | CLASSIFICATION | GENERATION | REPEATS | STRUCTURE PREDICTION | Sequence Analysis, Protein - methods | Computational Biology - methods | Molecular Sequence Annotation | Computational Biology - trends | Sequence Analysis, Protein - statistics & numerical data | Teaching | Computational Biology - education | Protein Domains | Proteins - classification | Internet | Proteins - chemistry | Sequence Analysis, Protein - trends | Software - trends | Web Server issue
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4. Proteomics in functional genomics : protein structure analysis
by Jollès, Pierre and Jörnvall, Hans
EXS, ISBN 3764358858, Volume 88., xiii, 236
Proteins | Chemistry | Gel electrophoresis | Protein conformation | Analysis | Genomes | Genome | Sequence analysis
Book
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5. Full Text Chromatin structure analyses identify miRNA promoters
by Ozsolak, Fatih and Poling, Laura L and Wang, Zhengxin and Liu, Hui and Liu, X. Shirley and Roeder, Robert G and Zhang, Xinmin and Song, Jun S and Fisher, David E
Genes and Development, ISSN 0890-9369, 11/2008, Volume 22, Issue 22, pp. 3172 - 3183
Although microRNAs (miRNAs) are key regulators of gene expression in normal human physiology and disease, transcriptional regulation of miRNAs is poorly... 
Promoter | Chromatin | MicroRNA | Transcription | ALPHA-AMANITIN | C-MYC | DEVELOPMENTAL BIOLOGY | chromatin | ANIMAL DEVELOPMENT | CELL BIOLOGY | CAENORHABDITIS-ELEGANS | GENETICS & HEREDITY | GENOME-WIDE ANALYSIS | GENE-EXPRESSION | microRNA | promoter | HISTONE MODIFICATIONS | MICRORNA EXPRESSION | RNA-POLYMERASE-III | RNA, Small Interfering - genetics | Luciferases - metabolism | Humans | Gene Expression Regulation, Neoplastic | Nucleosomes - genetics | Promoter Regions, Genetic - genetics | Recombinant Fusion Proteins - metabolism | Luciferases - genetics | Transfection | Chromatin Immunoprecipitation | RNA Interference | Cloning, Molecular | Cell Line, Tumor | Recombinant Fusion Proteins - genetics | Transcription, Genetic | MicroRNAs - genetics | HeLa Cells | Chromatin - genetics | Promoters (Genetics) | RNA | Analysis | Research | Genetic transcription | Structure | Research Paper
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6. Protein structure analysis
: preparation, characterization, and microsequencing
by Choli-Papadopoulou, T. 1956- (Theodora) and Kamp, R. M. 1951- (Roza Maria) and Wittmann-Liebold, B. 1931- (Brigitte)
1997, Springer lab manual, ISBN 3540615008, xiii, 316
Proteins | Structure | Laboratory manuals
Book
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7. Full Text iMolTalk: An interactive, internet-based protein structure analysis server
by Diemand, Alexander V and Scheib, Holger
Nucleic Acids Research, ISSN 0305-1048, 07/2004, Volume 32, Issue Web Server issue, pp. W512 - W516
iMolTalk (http://i.moltalk.org) is a new and interactive web server for protein structure analysis. It addresses the need to identify and highlight... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOMICS | Amino Acid Sequence | User-Computer Interface | Aspartate Aminotransferase, Mitochondrial - chemistry | Protein Conformation | Software | Internet | Proteins - chemistry
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8. Protein bioinformatics
: an algorithmic approach to sequence and structure analysis
by Eidhammer, Ingvar and Jonassen, Inge and Taylor, W. R. (Willie R.)
2004, ISBN 0470848391, xviii, 355
Proteins | Structure | Bioinformatics
Book
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9. Full Text Tools for integrated sequence-structure analysis with UCSF Chimera
by Meng, Elaine C and Pettersen, Eric F and Couch, Gregory S and Huang, Conrad C and Ferrin, Thomas E
BMC Bioinformatics, ISSN 1471-2105, 07/2006, Volume 7, Issue 1, pp. 339 - 339
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function... 
VISUALIZATION | SIMILARITIES | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | VMD | PROTEIN-STRUCTURE ALIGNMENT | Sequence Analysis, Protein - methods | User-Computer Interface | Models, Chemical | Systems Integration | Models, Molecular | Structure-Activity Relationship | Proteins - genetics | Computer Graphics | Sequence Alignment - methods | Computer Simulation | Database Management Systems | Databases, Protein | Protein Conformation | Proteins - classification | Software | Proteins - chemistry | Pattern Recognition, Automated - methods | Proteins - ultrastructure
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10. Full Text Crystal structure analysis of warfarin binding to human serum albumin. Anatomy of drug site I
by Petitpas, Isabelle and Bhattacharya, Ananyo A and Twine, Sue and East, Malcolm and Curry, Stephen
Journal of Biological Chemistry, ISSN 0021-9258, 06/2001, Volume 276, Issue 25, pp. 22804 - 22809
Human serum albumin (HSA) is an abundant transport protein found in plasma that binds a wide variety of drugs in two primary binding sites (I and II) and can... 
CELLS | FRAGMENTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESOLUTION | FATTY-ACIDS | INSIGHTS | REVEALS | Albumins - chemistry | Albumins - metabolism | Stereoisomerism | Humans | Warfarin - metabolism | Models, Molecular | Protein Binding | Warfarin - chemistry | Crystallography, X-Ray | Protein Conformation | Myristic Acid - chemistry | Binding Sites
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11. Full Text Principles of electron capture and transfer dissociation mass spectrometry applied to peptide and protein structure analysis
by Zhurov, Konstantin O and Fornelli, Luca and Wodrich, Matthew D and Laskay, nige A and Tsybin, Yury O
Chemical Society Reviews, ISSN 0306-0012, 5/2013, Volume 42, Issue 12, pp. 514 - 53
This tutorial review describes the principles and practices of electron capture and transfer dissociation (ECD/ETD or ExD) mass spectrometry (MS) employed for... 
MIGRATION | AMINO-ACID | ACTIVATION | TOP-DOWN | ALPHA BOND-CLEAVAGE | IONS | FRAGMENTATION | CHEMISTRY, MULTIDISCIPLINARY | HYDROGEN-EXCHANGE | PREDICTION | PROTEOMICS | Amino Acid Sequence | Tandem Mass Spectrometry | Proteomics | Proteins - analysis | Chromatography, High Pressure Liquid | Phosphopeptides - analysis | Peptides - analysis | Electrons | Proteins | Electron capture | Peptides | Beta decay | Life sciences | Mass spectrometry | Radicals | Guidelines
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12. Full Text ProteinsPlus: a web portal for structure analysis of macromolecules
by Fahrrolfes, R and Bietz, S and Flachsenberg, F and Meyder, A and Nittinger, E and Otto, T and Volkamer, A and Rarey, M
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 07/2017, Volume 45, Issue W1, pp. W337 - W343
With currently more than 126 000 publicly available structures and an increasing growth rate, the Protein Data Bank constitutes a rich data source for... 
HYDROGEN-ATOMS | LIGAND COMPLEXES | DATA-BANK | BIOCHEMISTRY & MOLECULAR BIOLOGY | DRUG DISCOVERY | INTERFACES | GENERATION | PROTONATION STATES | BINDING-SITES | 2-DIMENSIONAL COMPLEX DIAGRAMS | ELECTRON-DENSITY | Web Server Issue
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13. Full Text Protein structure analysis of mutations causing inheritable diseases : an e-science approach with life scientist friendly interfaces
by Venselaar, H and Beek, T.A.H. te and Kuipers, R.K.P and Hekkelman, M.L and Vriend, G
BMC Bioinformatics, ISSN 1471-2105, 2010, Volume 11, Issue 1, pp. 548 - 548
BACKGROUND: Many newly detected point mutations are located in protein-coding regions of the human genome. Knowledge of their effects on the protein's 3D... 
DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE ALIGNMENT | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PREDICTION | P53 | Proteins - genetics | User-Computer Interface | Computational Biology - methods | Databases, Protein | Humans | Genetic Diseases, Inborn - genetics | Protein Conformation | Software | Mutation | Proteins - chemistry | Genome, Human | Proteins | Usage | Genetic disorders | Gene mutations | User interface | Analysis | Research | Structure | Computational biology | Science | Medical research | Bioinformatics | prediction | database | sequence alignment | p53
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14. Mathematical methods for protein structure analysis and design
: C.I.M.E. Summer School, Martina Franca, Italy, July 9-15, 2000 : advanced lectures
by Guerra, Concettina and Istrail, Sorin and SpringerLink (Online service)
2003, Lecture notes in bioinformatics., ISBN 3540401040, Volume 2666., xi, 157
The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga... 
Proteins | Mathematical models | Computer vision | Computer software | Database management | Discrete Mathematics in Computer Science | Computer graphics | Image Processing and Computer Vision | Mathematics, general | Mathematics | Computational complexity | Algorithm Analysis and Problem Complexity
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15. Full Text Protein dynamics investigated by inherent structure analysis
by Francesco Rao and Martin Karplus and Frank H. Stillinger
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 5/2010, Volume 107, Issue 20, pp. 9152 - 9157
Molecular dynamics (MD) simulations provide essential information about the thermodynamics and dynamics of proteins. To construct the free-energy surface from... 
Potential energy | Liquids | Degrees of freedom | Energy | Protein folding | Time series | Molecular dynamics | Trajectories | Mathematical minima | Free energy | Energy landscapes | Molecular dynamics simulations | Conformational dynamics | Complex networks | molecular dynamics simulations | MOLECULAR-DYNAMICS | AMIDE-I | LANDSCAPE | MULTIDISCIPLINARY SCIENCES | TRAP | complex networks | COMPLEX NETWORK | SUPERCOOLED LIQUIDS | PEPTIDE | CONFORMATIONS | energy landscapes | conformational dynamics | SIMULATIONS | Thermodynamics | Protein Conformation | Kinetics | Proteins - chemistry | Molecular Dynamics Simulation | Proteins | Physiological aspects | Research | Properties | Conformation | Biological Sciences | Physical Sciences
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16. Full Text Novel features of eukaryotic photosystem II revealed by its crystal structure analysis from a red alga
by Ago, Hideo and Adachi, Hideyuki and Umena, Yasufumi and Tashiro, Takayoshi and Kawakami, Keisuke and Tian, Nobuo Kamiya Lirong and Han, Guangye and Kuang, Tingyun and Liu, Zheyi and Wang, Fangjun and Zou, Hanfa and Enami, Isao and Miyano, Masashi and Shen, Jian-Ren
Journal of Biological Chemistry, ISSN 0021-9258, 03/2016, Volume 291, Issue 11, pp. 5676 - 5687
Photosystem II (PSII) catalyzes light-induced water splitting, leading to the evolution of molecular oxygen indispensible for life on the earth. The crystal... 
electron transfer complex | CYANOBACTERIAL | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | CROSS-LINKING | CYANIDIUM-CALDARIUM | FUNCTIONAL-PROPERTIES | PSBQ PROTEIN | photosystem II | x-ray crystallography | ANGSTROM RESOLUTION | crystallography | 12-KDA PROTEIN | photosynthesis | cyanobacteria | crystal structure | membrane protein | BINDING | EXTRINSIC PROTEINS | Amino Acid Sequence | Photosystem II Protein Complex - ultrastructure | Sequence Alignment | Plant Proteins - chemistry | Photosystem II Protein Complex - chemistry | Protein Multimerization | Rhodophyta - chemistry | Molecular Sequence Data | Crystallography, X-Ray | Protein Conformation | Plant Proteins - ultrastructure | Bioenergetics
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17. Full Text Automated Assignment of MS/MS Cleavable Cross-Links in Protein 3D-Structure Analysis
by Götze, Michael and Pettelkau, Jens and Fritzsche, Romy and Ihling, Christian H and Schäfer, Mathias and Sinz, Andrea
Journal of The American Society for Mass Spectrometry, ISSN 1044-0305, 1/2015, Volume 26, Issue 1, pp. 83 - 97
CID-MS/MS cleavable cross-linkers hold an enormous potential for an automated analysis of cross-linked products, which is essential for conducting structural... 
Chemical cross-linking | Cleavable cross-linkers | Biotechnology | Chemistry | Analytical Chemistry | Proteomics | Protein 3D-structure | Automated data analysis | Software | Bioinformatics | Mass spectrometry | Organic Chemistry | REAGENT | CHEMISTRY, ANALYTICAL | BIOCHEMICAL RESEARCH METHODS | CHEMISTRY, PHYSICAL | IDENTIFICATION | GUANYLYL CYCLASE | FRAGMENTATION REACTIONS | SPECTROSCOPY | MASS-SPECTROMETRIC ANALYSIS | GAS-PHASE | ARCHITECTURE | PEPTIDE COMPLEX | CONSTRAINTS | TANDEM MS | Cross-Linking Reagents | Sequence Analysis, Protein - methods | User-Computer Interface | Models, Molecular | Proteins - chemistry | Tandem Mass Spectrometry - methods | Proteins | Crosslinked polymers | Information management | Pharmacy | Data analysis | Automation | Mathematical analysis | Graphical user interface | Links | Crosslinking | Workflow | Software development tools | Structural analysis
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