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1. Quantitative Proteomics
by Gaskell, S.J., editor of compilation and Eyers, Claire E., editor of compilation and Royal Society of Chemistry (Great Britain), issuing body
2014, New developments in mass spectrometry, ISBN 9781849738088, Volume Number 1, xviii, 371
This exemplary book will be essential reading for analytical and biological mass spectrometrists working in proteomics research, as well as those undertaking... 
Mass spectrometry | Proteomics | Life Sciences | General | SCIENCE | Chemistry, Analytic | Quantitative
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2. Full Text Systems proteomics of liver mitochondria function
by Williams, Evan G and Wu, Yibo and Jha, Pooja and Dubuis, Sébastien and Blattmann, Peter and Argmann, Carmen A and Houten, Sander M and Amariuta, Tiffany and Wolski, Witold and Zamboni, Nicola and Aebersold, Ruedi and Auwerx, Johan
Science, ISSN 0036-8075, 2016, Volume 352, Issue 6291, pp. aad0189 - aad0189
Recent improvements in quantitative proteomics approaches, including Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH-MS), permit... 
METABOLOMICS | CHOLESTEROL | METABOLISM | GENE | HIGH-THROUGHPUT | OMICS | MULTIDISCIPLINARY SCIENCES | VALIDATION | PPAR-GAMMA | WIDE ASSOCIATION | IDENTIFICATION | Mitochondria, Liver - genetics | Metabolomics | Mitochondria, Liver - metabolism | Humans | Liver - metabolism | Transcriptome | Metabolome | Molecular Sequence Data | Proteome | Electron Transport Complex IV - genetics | Cholesterol - metabolism | Mice, Inbred Strains | Electron Transport Complex IV - metabolism | Hep G2 Cells | Genetic Variation | Metabolic Networks and Pathways - genetics | Animals | Diet | Proteomics | Mice | Quantitative Trait Loci | Datasets | Mitochondria | Analysis | Index Medicus | Proteins | Metabolites | Data sets | Liver | Genetics | Links
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3. Full Text Proteomics meets the scientific method
by Picotti, Paola and Bodenmiller, Bernd and Aebersold, Ruedi
Nature Methods, ISSN 1548-7091, 01/2013, Volume 10, Issue 1, pp. 24 - 27
  By delivering precise, reproducible quantification of proteins of interest in biological samples, targeted proteomics approaches are allowing researchers to... 
MONITORING MASS-SPECTROMETRY | QUANTIFICATION | BIOCHEMICAL RESEARCH METHODS | CELL-CULTURE | CYTOMETRY | PROTEINS | QUANTITATIVE-ANALYSIS | Proteins - chemistry | Proteome - analysis | Proteomics - methods | Humans | Biomarkers - analysis | Mass spectrometry | Scientific method | Proteomics | Index Medicus
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4. Full Text A proteomics analysis of CK2β(−/−) C2C12 cells provides novel insights into the biological functions of the non‐catalytic β subunit
by Borgo, Christian and Franchin, Cinzia and Cesaro, Luca and Zaramella, Silvia and Arrigoni, Giorgio and Salvi, Mauro and Pinna, Lorenzo A
The FEBS Journal, ISSN 1742-464X, 04/2019, Volume 286, Issue 8, pp. 1561 - 1575
The acronym CK2 (derived from the misnomer ‘casein kinase‐2’) denotes a pleiotropic acidophilic protein kinase implicated in a plethora of cellular functions,... 
protein kinases | protein phosphorylation | quantitative proteomics | cell signaling | REGULATORY SUBUNIT | BIOCHEMISTRY & MOLECULAR BIOLOGY | PROTEIN-KINASE CK2 | Deactivation | Functional analysis | Malignancy | Kinases | Inactivation | Myoblasts | Proteins | Casein | Protein kinase | Proteomics | Cell cycle | Catalysis | Catalytic subunits
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5. Full Text Mass Spectrometric Proteomics
by Iadarola, Paolo
2019, ISBN 9783038978275
As suggested by the title of this Special Issue, liquid chromatography-mass spectrometry plays a pivotal role in the field of proteomics. Indeed, the research... 
n/a | urine | chemometrics | cleavage | trypsin | proteoform | metal complexes | sigE | peptide | BNCT | quality control | Ophiocordyceps sinensis | pseudotrypsin | ESI-MS | ionization enhancers | proteome | transplantation | fungi marker peptide | tandem MS | Rice (Oryza sativa L | quantitative proteomics | cow’s milk | Ex Vivo Lung Perfusion (EVLP) | ultra-performance liquid chromatography/Orbitrap Fusion mass spectrometry | thyroid cancer | anticancer drugs | NAPDH balance | whey proteins and caseins | targeted proteome analysis | digestion | specificity | mass spectrometry | MudPIT | mechanism | Synechocystis sp | autolysis | chain | proteomics | PCC 6803 | quaternary ammonium salts | differentially expressed proteins | protein lysine acetylation | post-translational modification | HPLC-ESI-Q-TOF MS | Rana chensinensis oviduct | isobaric labeling reagents | squamous cell cancer of head and neck | central carbon metabolism | nanoLC-MS/MS | LC-MS | regulation | top-down proteomics | iTRAQ | boron | tissue atlas
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6. Full Text Mapping intact protein isoforms in discovery mode using top-down proteomics
by Tran, John C and Zamdborg, Leonid and Ahlf, Dorothy R and Lee, Ji Eun and Catherman, Adam D and Durbin, Kenneth R and Tipton, Jeremiah D and Vellaichamy, Adaikkalam and Kellie, John F and Li, Mingxi and Wu, Cong and Sweet, Steve M. M and Early, Bryan P and Siuti, Nertila and Leduc, Richard D and Compton, Philip D and Thomas, Paul M and Kelleher, Neil L
Nature, ISSN 0028-0836, 12/2011, Volume 480, Issue 7376, pp. 254 - 258
A full description of the human proteome relies on the challenging task of detecting mature and changing forms of protein molecules in the body. Large-scale... 
PRECISE | ELECTROPHORESIS | DISSOCIATION | MULTIDISCIPLINARY SCIENCES | LARGE-SCALE | TIME | SEPARATION | IDENTIFICATION | CELLULAR SENESCENCE | QUANTITATIVE-ANALYSIS | CHROMATOGRAPHY-MASS-SPECTROMETRY | Cell Line | Cellular Senescence - genetics | Alternative Splicing | Humans | Proteomics - instrumentation | Protein Isoforms - analysis | Proteome - analysis | Proteome - chemistry | Phenotype | Protein Isoforms - chemistry | Proteolysis | Databases, Protein | Protein Processing, Post-Translational | DNA Damage | HeLa Cells | Proteomics - methods | HMGA1a Protein - analysis | HMGA1b Protein - analysis | Proteins | Analytical chemistry | Fractionation | Proteomics | DNA methylation | Mass spectrometry | Methods | Data bases | Deoxyribonucleic acid--DNA | Questioning | Index Medicus
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7. Full Text Chromatin enrichment for proteomics
by Kustatscher, Georg and Wills, Karen L. H and Furlan, Cristina and Rappsilber, Juri
Nature Protocols, ISSN 1754-2189, 2014, Volume 9, Issue 9, pp. 2090 - 2099
During interphase, chromatin hosts fundamental cellular processes, such as gene expression, DNA replication and DNA damage repair. To analyze chromatin on a... 
QUANTITATIVE PROTEOMICS | AMINO-ACIDS | GENOMIC REGIONS | DNA | BINDING PROTEINS | PURIFICATION | BIOCHEMICAL RESEARCH METHODS | IMMUNOPRECIPITATION ENCHIP | CROSS-LINKING | CELL-CULTURE | IDENTIFICATION | DNA - isolation & purification | Proteomics - methods | Chemistry Techniques, Analytical - methods | Centrifugation | Formaldehyde | Chromatin - chemistry | Chromatin | Proteomics | Physiological aspects | Genetic research | Biochemical assays | Genetic aspects | Research | Methods | Index Medicus
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8. Quantitative proteomics by mass spectrometry
by Sechi, Salvatore
2007, Methods in Molecular Biology, ISBN 9781588295712, Volume 359., x, 218
Mass spectrometry -- Technique | Proteomics -- Methodology | Technique | Methodology | Mass spectrometry | Proteomics | Life Sciences | Biomedicine general | Cell Biology
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9. Full Text Panorama: A targeted proteomics knowledge base
by Sharma, Vagisha and Eckels, Josh and Taylor, Greg K and Shulman, Nicholas J and Stergachis, Andrew B and Joyner, Shannon A and Yan, Ping and Whiteaker, Jeffrey R and Halusa, Goran N and Schilling, Birgit and Gibson, Bradford W and Colangelo, Christopher M and Paulovich, Amanda G and Carr, Steven A and Jaffe, Jacob D and Maccoss, Michael J and Maclean, Brendan
Journal of Proteome Research, ISSN 1535-3893, 09/2014, Volume 13, Issue 9, pp. 4205 - 4210
Panorama is a web application for storing, sharing, analyzing, and reusing targeted assays created and refined with Skyline,(1) an increasingly popular Windows... 
knowledge base | chromatogram libraries | targeted proteomics | mass spectrometry | MRM | Software | skyline | SRM | BIOCHEMICAL RESEARCH METHODS | QUANTITATIVE-ANALYSIS | MASS-SPECTROMETRY | PLATFORM | PEPTIDES | ASSAYS | Knowledge Bases | Internet | Proteomics - methods | Databases, Protein | Mass Spectrometry | Index Medicus | Technical Note
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10. Full Text A study protocol for quantitative targeted absolute proteomics (QTAP) by LC-MS/MS: Application for inter-strain differences in protein expression levels of transporters, receptors, claudin-5, and marker proteins at the blood-brain barrier in ddY, FVB, and C57BL/6J mice
by Uchida, Yasuo and Tachikawa, Masanori and Obuchi, Wataru and Hoshi, Yutaro and Tomioka, Yusuke and Ohtsuki, Sumio and Terasaki, Tetsuya
Fluids and Barriers of the CNS, ISSN 2045-8118, 06/2013, Volume 10, Issue 1, pp. 21 - 21
Proteomics has opened a new horizon in biological sciences. Global proteomic analysis is a promising technology for the discovery of thousands of proteins,... 
In silico peptide selection criteria | Strain difference | LC-MS/MS | Blood-brain barrier | Quantitative targeted absolute proteomics (QTAP) | Receptor | Absolute expression level | Tight junction protein | Transporter | Pharmacoproteomics (PPx) | Proteins | Usage | Physiological aspects | Liquid chromatography | Research | Mass spectrometry | Technology application | Brain | Proteomics | Mice | Adenosine triphosphatase | Studies | Medical research
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11. Full Text Quantitative targeted absolute proteomics of human blood–brain barrier transporters and receptors
by Uchida, Yasuo and Ohtsuki, Sumio and Katsukura, Yuki and Ikeda, Chiemi and Suzuki, Takashi and Kamiie, Junichi and Terasaki, Tetsuya
Journal of Neurochemistry, ISSN 0022-3042, 04/2011, Volume 117, Issue 2, pp. 333 - 345
P>We have obtained, for the first time, a quantitative protein expression profile of membrane transporters and receptors in human brain microvessels, that is,... 
species difference | quantitative targeted absolute proteomics | human blood–brain barrier | receptors | transporters | liquid chromatography–tandem mass spectrometry | Transporters | Liquid chromatography-tandem mass spectrometry | Receptors | Human blood-brain barrier | Species difference | Quantitative targeted absolute proteomics | ORGANIC ANION TRANSPORTER | BIOCHEMISTRY & MOLECULAR BIOLOGY | human blood-brain barrier | TANDEM MASS-SPECTROMETRY | NEUROSCIENCES | P-GLYCOPROTEIN | SUBSTRATE CHARACTERIZATION | PEPTIDE SELECTION | liquid chromatography-tandem mass spectrometry | COTRANSPORTER SGLT1 | CAPILLARY ENDOTHELIAL-CELLS | RAT-BRAIN | ABC TRANSPORTERS | CANCER RESISTANCE PROTEIN | Brain - cytology | Age Factors | Humans | Middle Aged | Receptors, Cell Surface - metabolism | Male | Blood-Brain Barrier - metabolism | Young Adult | Animals | Adolescent | Adult | Membrane Transport Proteins - metabolism | Aged | Biological Transport - physiology | Membrane Proteins - metabolism | Mice | Proteomics - methods | Chromatography, Liquid - methods | Tandem Mass Spectrometry - methods | Care and treatment | Peptides | Proteomics | Universities and colleges | G proteins | Glucose | Mass spectrometry | Dextrose | Cancer | Membrane proteins | Brain | Neurons | Rodents | Blood | Index Medicus
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12. Full Text Identification of Prolificacy‐Related Differentially Expressed Proteins from Sheep (Ovis aries) Hypothalamus by Comparative Proteomics
by Zhang, Zhuangbiao and Tang, Jishun and Di, Ran and Liu, Qiuyue and Wang, Xiangyu and Gan, Shangquan and Zhang, Xiaosheng and Zhang, Jinlong and Chen, Wei and Hu, Wenping and Chu, Mingxing
PROTEOMICS, ISSN 1615-9853, 07/2019, Volume 19, Issue 14, pp. e1900118 - n/a
Reproduction, as a physiologically complex process, can significantly affect the development of the sheep industry. However, a lack of overall understanding to... 
TMT‐based quantitative proteomics | GnRH | hypothalamus | sheep | reproduction | TMT-based quantitative proteomics | ACETYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | BIOCHEMICAL RESEARCH METHODS | BOOROOLA FECB | INSULIN | XRN2 | NEURONS | SECRETION | GENE FECB | PREMATURE TERMINATION | Proteins | Somatotropin | Genomics | Proteomics | Sheep | Comparative analysis | Mass spectrometry
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13. Full Text Use of proteomics to detect sex-related differences in effects of toxicants: implications for using proteomics in toxicology
by Rietjens, Ivonne M. C. M and Vervoort, Jacques and Maslowska-Górnicz, Anna and Van den Brink, Nico and Beekmann, Karsten
Critical Reviews in Toxicology, ISSN 1040-8444, 09/2018, Volume 48, Issue 8, pp. 666 - 681
This review provides an overview of results obtained when using proteome analysis for detecting sex-based differences in response to toxicants. It reveals... 
state-of-the-art | Sex related differences | proteomics | mode of action | toxicants | QUANTITATIVE PROTEOMICS | ADIPOSE-TISSUES | MYTILUS-GALLOPROVINCIALIS | DIMORPHIC REGULATION | GENDER-SPECIFIC RESPONSES | MASS-SPECTROMETRY | MEDAKA ORYZIAS-MELASTIGMA | CHRONIC EXPOSURE | PLASMA-PROTEINS | PROTEIN EXPRESSION | TOXICOLOGY
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14. Full Text Selected reaction monitoring for quantitative proteomics: a tutorial
by Aebersold, Ruedi and Lange, Vinzenz and Domon, Bruno and Picotti, Paola
Molecular Systems Biology, ISSN 1744-4292, 10/2008, Volume 4, Issue 1, pp. 222 - n/a
Systems biology relies on data sets in which the same group of proteins is consistently identified and precisely quantified across multiple samples, a... 
MRM | Quantitative | Mass spectrometry | Proteomics | SRM | ACID | proteomics | STRATEGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | IDENTIFICATION | COMPLEX PROTEIN MIXTURES | MASS-SPECTROMETRY | HIGH-SENSITIVITY | DATABASE | quantitative | MULTIPLEXED ABSOLUTE QUANTIFICATION | CONCATENATED SIGNATURE PEPTIDES | mass spectrometry | EXPRESSION | Systems Biology - methods | Tandem Mass Spectrometry - methods | Proteomics - methods | Index Medicus
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