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R Journal, ISSN 2073-4859, 2016, Volume 8, Issue 1, pp. 289 - 317
Finite mixture models are being used increasingly to model a wide variety of random phenomena for clustering, classification and density estimation. mclust is... 
NUMBER | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | DISCRIMINANT-ANALYSIS | COMPONENTS | R PACKAGE | STATISTICS & PROBABILITY | LIKELIHOOD
Journal Article
Journal of statistical software, ISSN 1548-7660, 2012, Volume 48, Issue 4, pp. 1 - 18
We present the qgraph package for R, which provides an interface to visualize data through network modeling techniques. For instance, a correlation matrix can... 
Networks | Graph theory | Factor analysis | Correlations | Data visualization | factor analysis | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | graph theory | R PACKAGE | STATISTICS & PROBABILITY | data visualization | networks | correlations
Journal Article
Methods in Ecology and Evolution, ISSN 2041-210X, 01/2017, Volume 8, Issue 1, pp. 28 - 36
Summary We present an r package, ggtree, which provides programmable visualization and annotation of phylogenetic trees. ggtree can read more tree file formats... 
annotation | phylogeny | visualization | evolution | r package | bioconductor | MAXIMUM-LIKELIHOOD | CHINA | ESTABLISHMENT | SOFTWARE | PLACEMENT | SEQUENCE | BIOLOGY | ECOLOGY | DIVERGENCE | TOOL | Trees | Phylogenetics | Coloring | Collapsing | Visualization | Annotations | Nucleotide sequence | Zooming | Packages | Phylogeny | Source code | Object recognition
Journal Article
Journal of Statistical Software, ISSN 1548-7660, 2016, Volume 72, Issue CS1, pp. 1 - 15
An increasing number of quantitative reviews of epidemiological data includes a dose-response analysis. Aims of this paper are to describe the main aspects of... 
Dosresmeta | Dose-response | Mixed-effects model | Meta-analysis | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | mixed-effects model | ALCOHOL | dosresmeta | dose-response | meta-analysis | GENERALIZED LEAST-SQUARES | STATISTICS & PROBABILITY | MODEL | TREND ESTIMATION | R-package
Journal Article
Bioinformatics, ISSN 1367-4803, 11/2011, Volume 27, Issue 21, pp. 3070 - 3071
While the R software is becoming a standard for the analysis of genetic data, classical population genetics tools are being challenged by the increasing... 
R-PACKAGE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ASSOCIATION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Genetics, Population | Genome-Wide Association Study | Polymorphism, Single Nucleotide | Software | Genome | Genomics - methods | Applications Note
Journal Article
Methods in ecology and evolution, ISSN 2041-210X, 2016, Volume 7, Issue 10, pp. 1246 - 1257
1.Ecologists and many evolutionary biologists relate variation in physiological, behavioral, life-history, demographic, population and community traits to... 
Global environmental change | international | cross‐validation | bias | climate sensitivity | precision | R package climwin | weather | sliding window | false positive | sample size | climate change | cross-validation | PHENOTYPIC PLASTICITY | R package climwin | POPULATIONS | DRIVERS | RESPONSES | IMPACT | TEMPERATURE | ECOLOGY | SCALE | Literature reviews | Weather | Biological effects | Temperature | El Nino | Exploration | Temporal resolution
Journal Article
Journal of Statistical Software, ISSN 1548-7660, 2018, Volume 84, Issue 9, pp. 1 - 39
Spatial data relating to non-overlapping areal units are prevalent in fields such as economics, environmental science, epidemiology and social science, and a... 
Conditional autoregressive priors | Spatio-temporal areal unit modeling | Bayesian inference | R package | conditional autoregressive priors | AIR-POLLUTION | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | spatio-temporal areal unit modeling | SPACE-TIME VARIATION | STATISTICS & PROBABILITY | HEALTH | TRENDS | BAYESIAN-INFERENCE
Journal Article
Bioinformatics, ISSN 1367-4803, 10/2012, Volume 28, Issue 19, pp. 2537 - 2539
Journal Article
Nature Communications, ISSN 2041-1723, 04/2016, Volume 7, Issue 1, p. 11271
Journal Article
by Cavalli, Florence M.G and Remke, Marc and Rampasek, Ladislav and Peacock, John and Shih, David J.H and Luu, Betty and Garzia, Livia and Torchia, Jonathon and Nor, Carolina and Morrissy, A. Sorana and Agnihotri, Sameer and Thompson, Yuan Yao and Kuzan-Fischer, Claudia M and Farooq, Hamza and Isaev, Keren and Daniels, Craig and Cho, Byung-Kyu and Kim, Seung-Ki and Wang, Kyu-Chang and Lee, Ji Yeoun and Grajkowska, Wieslawa A and Perek-Polnik, Marta and Vasiljevic, Alexandre and Faure-Conter, Cecile and Jouvet, Anne and Giannini, Caterina and Nageswara Rao, Amulya A and Li, Kay Ka Wai and Ng, Ho-Keung and Eberhart, Charles G and Pollack, Ian F and Hamilton, Ronald L and Gillespie, G. Yancey and Olson, James M and Leary, Sarah and Weiss, William A and Lach, Boleslaw and Chambless, Lola B and Thompson, Reid C and Cooper, Michael K and Vibhakar, Rajeev and Hauser, Peter and van Veelen, Marie-Lise C and Kros, Johan M and French, Pim J and Ra, Young Shin and Kumabe, Toshihiro and López-Aguilar, Enrique and Zitterbart, Karel and Sterba, Jaroslav and Finocchiaro, Gaetano and Massimino, Maura and Van Meir, Erwin G and Osuka, Satoru and Shofuda, Tomoko and Klekner, Almos and Zollo, Massimo and Leonard, Jeffrey R and Rubin, Joshua B and Jabado, Nada and Albrecht, Steffen and Mora, Jaume and Van Meter, Timothy E and Jung, Shin and Moore, Andrew S and Hallahan, Andrew R and Chan, Jennifer A and Tirapelli, Daniela P.C and Carlotti, Carlos G and Fouladi, Maryam and Pimentel, José and Faria, Claudia C and Saad, Ali G and Massimi, Luca and Liau, Linda M and Wheeler, Helen and Nakamura, Hideo and Elbabaa, Samer K and Perezpeña-Diazconti, Mario and Chico Ponce de León, Fernando and Robinson, Shenandoah and Zapotocky, Michal and Lassaletta, Alvaro and Huang, Annie and Hawkins, Cynthia E and Tabori, Uri and Bouffet, Eric and Bartels, Ute and Dirks, Peter B and Rutka, James T and Bader, Gary D and Reimand, Jüri and Goldenberg, Anna and Ramaswamy, Vijay and Taylor, Michael D
Cancer Cell, ISSN 1535-6108, 06/2017, Volume 31, Issue 6, pp. 737 - 754.e6
Journal Article