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Molecular Cell, ISSN 1097-2765, 01/2017, Volume 65, Issue 1, pp. 39 - 51
Understanding RNA processing and turnover requires knowledge of cleavages by major endoribonucleases within a living cell. We have employed TIER-seq... 
Hfq | non-coding RNA | sRNA maturation | 3′ UTR | uridine ruler | TIER-seq | RNA degradome | ArcZ | RNase E | RprA | TARGET MESSENGER-RNA | REGULATORY SMALL RNAS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | STRESS-RESPONSE | GENE-EXPRESSION | RIBONUCLEASE-E | GLOBAL ANALYSIS | RIBOSOMAL-RNA | ENDONUCLEOLYTIC CLEAVAGE | DNA MICROARRAYS | CELL BIOLOGY | RNA Precursors - chemistry | Endoribonucleases - chemistry | Endoribonucleases - genetics | Bacterial Proteins - chemistry | Transcriptome | Databases, Genetic | Salmonella enterica - genetics | Structure-Activity Relationship | RNA, Messenger - metabolism | Host Factor 1 Protein - metabolism | RNA, Small Untranslated - chemistry | Salmonella enterica - enzymology | RNA, Bacterial - genetics | RNA, Small Untranslated - genetics | RNA Precursors - metabolism | Catalysis | 3' Untranslated Regions | Nucleic Acid Conformation | Host Factor 1 Protein - genetics | RNA, Bacterial - metabolism | RNA, Small Untranslated - metabolism | Endoribonucleases - metabolism | RNA, Messenger - genetics | Bacterial Proteins - genetics | Computational Biology | RNA Precursors - genetics | Molecular Dynamics Simulation | RNA, Bacterial - chemistry | Bacterial Proteins - metabolism | RNA, Messenger - chemistry | Uridine - metabolism | Gene Expression Regulation, Bacterial | Nucleases | Messenger RNA | Nucleotides | Ribonuclease | Research institutes
Journal Article
2006, Handbook of experimental pharmacology, ISBN 3540272615, Volume 173, x, 464
Book
Science, ISSN 0036-8075, 9/2002, Volume 297, Issue 5589, pp. 2056 - 2060
In animals, the double-stranded RNA-specific endonuclease Dicer produces two classes of functionally distinct, tiny RNAs: microRNAs (miRNAs) and small... 
RNA precursors | Enzymes | MicroRNA | Messenger RNA | RNA interference | RNA | Drosophila | Small interfering RNA | Reports | Gene expression regulation | Embryos | REGULATORY RNA | CAENORHABDITIS-ELEGANS | GENE | INITIATION | PATHWAY | LIN-14 | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | C-ELEGANS | INTERFERENCE | EXPRESSION | RNA Helicases - metabolism | Protein Biosynthesis | RNA, Untranslated - metabolism | Minor Histocompatibility Antigens | Humans | Cytoplasm - metabolism | RNA, Messenger - metabolism | Drosophila melanogaster - genetics | Adenosine Triphosphate - metabolism | Base Sequence | RNA, Antisense - chemistry | Eukaryotic Initiation Factors | RNA, Untranslated - chemistry | RNA, Double-Stranded - metabolism | DEAD Box Protein 20 | RNA, Double-Stranded - chemistry | RNA-Induced Silencing Complex | DEAD-box RNA Helicases | Endoribonucleases - metabolism | Gene Silencing | Nuclear Proteins - metabolism | Ribonucleoproteins, Small Nuclear | Ribonucleoproteins - metabolism | Eukaryotic Initiation Factor-2 | Peptide Initiation Factors - metabolism | Animals | Base Pairing | Ribonuclease III | MicroRNAs | RNA, Antisense - metabolism | Argonaute Proteins | Cell Extracts | RNA, Messenger - chemistry | Models, Genetic | RNA, Small Interfering | HeLa Cells | Research | Biochemistry | Cellular biology | Ribonucleic acid--RNA | Ribonucleic acid
Journal Article
Journal Article
Nature Cell Biology, ISSN 1465-7392, 09/2017, Volume 19, Issue 9, pp. 1105 - 1115
The contribution of lncRNAs to tumour progression and the regulatory mechanisms driving their expression are areas of intense investigation. Here, we... 
EPITHELIAL-MESENCHYMAL TRANSITION | HETEROGENEITY | INVASION | NONCODING RNAS | BREAST-CANCER METASTASIS | RESISTANCE | STEM-CELL | TGF-BETA PROMOTES | IDENTIFICATION | CONTRIBUTES | CELL BIOLOGY | Alternative Splicing | Humans | Lung Neoplasms - metabolism | MicroRNAs - metabolism | RNA, Messenger - metabolism | Zinc Finger E-box-Binding Homeobox 1 - genetics | MCF-7 Cells | RNA Interference | Transcription, Genetic | Binding Sites | Caco-2 Cells | A549 Cells | Signal Transduction | RNA, Long Noncoding - chemistry | Breast Neoplasms - genetics | RNA, Messenger - chemistry | Mice | MicroRNAs - genetics | RNA-Binding Proteins - metabolism | Cell Movement | RNA Precursors - chemistry | RNA-Binding Proteins - genetics | Exons | Gene Expression Regulation, Neoplastic | Structure-Activity Relationship | Zinc Finger E-box-Binding Homeobox 1 - metabolism | Breast Neoplasms - metabolism | DNA-Binding Proteins - metabolism | Transfection | Lung Neoplasms - secondary | Epithelial-Mesenchymal Transition | Female | RNA Precursors - metabolism | Nuclear Proteins - genetics | Nucleic Acid Conformation | Lung Neoplasms - genetics | RNA Splice Sites | Neoplasm Invasiveness | RNA, Messenger - genetics | Heterogeneous-Nuclear Ribonucleoproteins - metabolism | Nuclear Proteins - metabolism | RNA Precursors - genetics | RNA, Long Noncoding - genetics | DNA-Binding Proteins - genetics | Heterogeneous-Nuclear Ribonucleoproteins - genetics | Animals | Breast Neoplasms - pathology | Protein Binding | RNA, Long Noncoding - metabolism | Translocation | Alternative splicing | Splicing | Mesenchyme | Regulatory mechanisms (biology) | mRNA | Nucleic acids | Ribonucleic acid--RNA | Tumors | long noncoding RNA (lncRNA) | epithelial-mesenchymal transition (EMT) | also known as PNUTS | alternative splicing | threonine-protein phosphatase 1 regulatory subunit 10 (PPP1R10 | Serine | heterogeneous nuclear ribonucleoprotein E1 (hnRNP E1) | miR-205
Journal Article
Molecular Cell, ISSN 1097-2765, 08/2017, Volume 67, Issue 3, pp. 387 - 399.e5
The DNA-mediated innate immune response underpins anti-microbial defenses and certain autoimmune diseases. Here we used immunoprecipitation, mass spectrometry,... 
HEXIM1 | DNA-PK | innate immune response | herpesvirus | paraspeckles | cGAS | NEAT1 | interferon stimulatory DNA | DEFENSE | PROTEIN | INHIBITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSCRIPTION | SENSOR | POLYMERASE-II | 7SK RNA | BINDING | GMP-AMP SYNTHASE | P-TEFB | CELL BIOLOGY | Human Umbilical Vein Endothelial Cells - metabolism | Humans | Octamer Transcription Factors - immunology | Intracellular Signaling Peptides and Proteins - metabolism | Herpesvirus 8, Human - immunology | RNA, Long Noncoding - immunology | PTB-Associated Splicing Factor - genetics | RNA Interference | Calcium-Binding Proteins - immunology | Octamer Transcription Factors - genetics | Nucleotidyltransferases - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Signal Transduction | Membrane Proteins - genetics | RNA-Binding Proteins - immunology | PTB-Associated Splicing Factor - metabolism | Nuclear Matrix-Associated Proteins - metabolism | PTB-Associated Splicing Factor - immunology | DNA - metabolism | Host-Pathogen Interactions | Nuclear Matrix-Associated Proteins - genetics | HeLa Cells | RNA-Binding Proteins - metabolism | Calcium-Binding Proteins - genetics | RNA-Binding Proteins - genetics | Multiprotein Complexes | Human Umbilical Vein Endothelial Cells - immunology | Intracellular Signaling Peptides and Proteins - immunology | Human Umbilical Vein Endothelial Cells - virology | Interferon Regulatory Factor-3 - genetics | Ku Autoantigen - genetics | Transfection | HEK293 Cells | Membrane Proteins - metabolism | Nuclear Proteins - genetics | Octamer Transcription Factors - metabolism | Interferon Regulatory Factor-3 - immunology | Calcium-Binding Proteins - metabolism | DNA - immunology | Nuclear Matrix-Associated Proteins - immunology | Ku Autoantigen - immunology | Membrane Proteins - immunology | Nuclear Proteins - metabolism | Ku Autoantigen - metabolism | RNA, Long Noncoding - genetics | Immunity, Innate | Nuclear Proteins - immunology | DNA - genetics | Interferon Regulatory Factor-3 - metabolism | Nucleotidyltransferases - genetics | Protein Binding | Nucleotidyltransferases - immunology | RNA, Long Noncoding - metabolism | RNA sequencing | Immune response | RNA | DNA | Genetic research | Interferon | Biological response modifiers | Mass spectrometry | Human Umbilical Vein Endothelial Cells | Nuclear Matrix-Associated Proteins | Herpesvirus 8, Human | RNA-Binding Proteins | Life Sciences | Interferon Regulatory Factor-3 | Genetics | Calcium-Binding Proteins | Intracellular Signaling Peptides and Proteins | PTB-Associated Splicing Factor | Nuclear Proteins | Membrane Proteins | Nucleotidyltransferases | Ku Autoantigen | Octamer Transcription Factors | RNA, Long Noncoding
Journal Article
The Plant Cell, ISSN 1040-4651, 4/2010, Volume 22, Issue 4, pp. 1104 - 1117
Journal Article
Journal Article